Query= MSMg01no460_f05.b1 MSMg01no460_f05.b1 CHROMAT_FILE:
MSMg01no460_f05.b1 PHD_FILE: MSMg01no460_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:32 2005
(555 letters)
>mm_chr3_16934296_16935250
Length = 955
Score = 1044 bits (540), Expect = 0.0
Identities = 549/552 (99%)
Strand = Plus / Minus
Query: 4 ggaattcctcatgtctaatcctaggtgttatgtagttgtttgaaggtttgggtacatttc 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ggaattcctcaagtctaatcctaggtgttatgtagttgtttgaaggtttgggtacatttc 834
Query: 64 ttagcttctcctttttccacattttccttatcaaaagtttaagaggattttactagatga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ttagcttctcctttttccacattttccttatcaaaagtttaagaggattttactagatga 774
Query: 124 tttttaaagtcccttccatgaagaattgtccatgattctttatcatgcaaactaaagtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttttaaagtcccttccatgaagaattgtccatgattctttatcatgcaaactaaagtgg 714
Query: 184 agaagtgaggtaaccacttagaagtatcaaaagacaagaagactcaatactttgctctgt 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 713 agaagtgaggtaaccacttagaagtatcaaaagagaagaagactcaatactttgctctgt 654
Query: 244 ttctttgtgtatttcaaatgaaaattattctttaatcctaaatcaccaggaaaaatttct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttctttgtgtatttcaaatgaaaattattctttaatcctaaatcaccaggaaaaatttct 594
Query: 304 gaactcatattttactctttataccaaccaaaactccatacatagggacgtgagtaaacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaactcatattttactctttataccaaccaaaactccatacatagggacgtgagtaaacc 534
Query: 364 aagttgagcataatgctctactgagttatgtggaattggcaaccactgtacttttattaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aagttgagcataatgctctactgagttatgtggaattggcaaccactgtacttttattaa 474
Query: 424 aatgatccatgttccctgtggcagactcagaacagcaagacacacaaatataaataaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aatgatccatgttccctgtggcagactcagaacagcaagacacacaaatataaataaatg 414
Query: 484 gaggatgccaaggcttgtttgtacagctacattctagtttaaacgtgaagacattgcagt 543
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gagaatgccaaggcttgtttgtacagctacattctagtttaaacgtgaagacattgcagt 354
Query: 544 ttggaaaacttt 555
||||||||||||
Sbjct: 353 ttggaaaacttt 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_f05.g1 MSMg01no460_f05.g1 CHROMAT_FILE:
MSMg01no460_f05.g1 PHD_FILE: MSMg01no460_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:32 2005
(502 letters)
>mm_chr3_16765375_16766276
Length = 902
Score = 847 bits (438), Expect = 0.0
Identities = 481/502 (95%), Gaps = 13/502 (2%)
Strand = Plus / Plus
Query: 1 cagaagtaaccccaaattaaaaataaaatcatgctcttacccaaatattggtcattgata 60
||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||
Sbjct: 201 cagaagtaaccccaaattaaaaataaaatcatgctatcacccaaatactggtcatttata 260
Query: 61 ttgattcttatgaaatgaaattagggctcttcaaagaaaaaaattcactctaggtaagag 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatttttatgaaatgaaattagggctcttcaaagaaaaaaattcactctaggtaagag 320
Query: 121 gtaattatgtataaggtatacataattatgtataaatctattggcatttgacaaattgat 180
|||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 321 gtaattatgtataaggta-a---------g---aaatctattggcatttgacaaattgat 367
Query: 181 gaagaaaaacaaccacaaaaactaaatacttatgacagcaacaaaagagcagctcacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaagaaaaacaaccacaaaaactaaatacttatgacagcaacaaaagagcagctcacagg 427
Query: 241 gcccatggccacacttaaaaccaattacacataaaaaattacatgtagccattatctact 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcccatggacacacttaaaaccaattacacataaaaaattacatgtagccattatctact 487
Query: 301 aaaaataattcattcattcatgctgaagttattataaataagtagataaaggagaacaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaaaataattcattcattcatgctgaagttattataaataagtagataaaggagaacaac 547
Query: 361 tctcagttatagtaaaattgtaagtggctgctggcaagtatgggggaaatattgcagttg 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 548 tctcagttatagtaaaattgtaagtggctgctggcatgtatgggggaaatattgcagttg 607
Query: 421 aaaagggagcatgctgaagccattatggtacagatggggtaaggtacaagctaatgaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 608 aaaagggagcatgctgaagccattatggtacagatggggtaaggtacaagctagtgaaaa 667
Query: 481 ttcgggtgtaaaaatcaagtct 502
||||||||||||||||||||||
Sbjct: 668 ttcgggtgtaaaaatcaagtct 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
