XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCA
AGTTTTCCCTGGACTACAGAGTGAGTTCCAGGACAGCCAGGGCTACATGA
TGATACATTGTAAAAGAAAAGAGAAGGAGAGAAAAGCAAAGTCCTGCTGT
CAAAGATCCTCTAGCCTCAGCTTTTAAATCCTGGGACTAAGATGCGCCAT
CCTGCCCAGAATATTTATTCTTTATTCACCTATTTGGTCAAGAGAAAGCT
GCTGTATATCTTCTGAGGGTTCAGCATTGTATGTCATAAGCAAAATAAAA
AAGCCTTTTATGGCTTCAATCCATAACTCAGAAGACCCACTCAGGGATGA
GAGTTTGAGGCCCCAGAGTTGGCTAGGGGCATAGCTCAATAGGAGAGTAC
TTGCTTAGAGTGTTCAAGGTTCTTGTTCCCAGAACAGAGGGAGAAAGACA
GACAGAGAAGCAAAGAAGAAGGGGATATGGGAGGGAAGAAAAAAAGACAC
CTGGCTGAGATTGAGCCTTTTTGCCATTGTTAAAAATATAAGTTTTAACT
GCTCAGAGAGGATCCTTGGAAGGGAATATAGGAGTGTTGGAAAGACTTTC
CTCAGGTACAGGCTGGTTATTTTAAACCTATTACTCTCTTTATCAAAAAA
AAAGTCCTGGTTCCTCAAAATAAAGCTAAAATGCAGTGGTTTGAAAATAA
GGGAAAATGGATTTCTTTTTTCTTATATCAAAAAATATTATCTCTTTT

CTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCTTTGTTCTCTATGTTTATTGTTTTAT
TACATGCAGAGGGAGTGTTTTTGTTATTCAGTCTATTTGGTGTCTTGTAT
GCTTCTTGTACTTTGGTAGGCATCTCCTTTAAGTTAAGACTATCTTCTTC
TATGGTTTTGTTAAAAAACATTTTCTGTGTCTTTGATCTGTGTTTCTTTT
CCTTCCTCAGTCTCTATTTTTTTTTTATTGTTTCATAGTGCTCCAGACTT
TTTAGATGTTTTGTGCCAGGGTTTTGTTTTGTTTTTTTTTTTTTTGACTG
TGATACCAATTTCTTCTAACATGTCTTCAATGCATGTAGTTCTCTCTTCC
ATCCTCTTGTACTCTTTTGGGGATACTTACTTTTGATACCTCTTTCAGTT
CCTAAAATTTTTATCTTCCGGTCTTTCTCCAGTTTGGTTTTTGCATGTAC
CTTTCCTTTGTTCTGTTTGTTATTTTCTTTATTCTTCTAACCTCCTTTTT
CCCCCTTGAATATCTTTTACTTACTTTTTTTCCCTTTTCTTTCTTTTTTT
TTTATTTCTTCATCTTTACCGTCGGTTTTTCTTCCTTTTATTTTTTTTAT
TTCTAATTTTCGTTTTTTTTAATCTTTGTACTTTTTTTTTTTTTTTCTTT
TCTCTATTCCCCCTTTTTTCTTTTTCATCTCCTATGTTTACCCCCATTTT
CACCTCCTCCTCTTTTCCTTTTN

Query= MSMg01no460_f22.b1 MSMg01no460_f22.b1 CHROMAT_FILE:
MSMg01no460_f22.b1 PHD_FILE: MSMg01no460_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:35 2005
         (431 letters)



>mm_chr3_57279671_57280501
          Length = 831

 Score =  717 bits (371), Expect = 0.0
 Identities = 416/435 (95%), Gaps = 8/435 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagagtgagttccaggacagccagggctacatgatgatacattgtaaaagaaaagaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 tacagagtgagttccaggacagccagggctacatgatgatacattgtaaaagaaaagaaa 626

                                                                       
Query: 61  aggagagaaaagcaaagtcctgctgtcaaagatcctctagcctcagcttttaaatcctgg 120
           |||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 625 aggagagaaaagaaaagtcctgttgtcaaagatcctcttgcctcagcttctaaatcctgg 566

                                                                       
Query: 121 gactaagatgcgccatcctgcccagaatatttattctttattcacctatttggtcaagag 180
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 gactaagatgtgccatcctgcccataatatttattctttattcacctatttggtcaagag 506

                                                                       
Query: 181 aaagctgctgtatatcttctgagggttcagcattgtatgtcataagcaaaataaaaaagc 240
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 aaaactgctgtatatcttctgagggttcagcattgtatgtcataaacaaaataaaaaagc 446

                                                                       
Query: 241 ctttta----tggcttcaatccataactcagaagacccactcagggatgagagtttgagg 296
           |    |    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 c----aggcatggcttcaatccataactcagaagacccactcagggatgagagtttgagg 390

                                                                       
Query: 297 ccccagagttggctaggggcatagctcaataggagagtacttgcttagagtgttcaaggt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccccagagttggctaggggcatagctcaataggagagtacttgcttagagtgttcaaggt 330

                                                                       
Query: 357 tcttgttcccagaacagagggagaaagacagacagagaagcaaagaagaaggggatatgg 416
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 329 tcttgttcccagaacagagggagaaagaaagacagagaagcaaagaagaaggggatatgg 270

                          
Query: 417 gagggaagaaaaaaa 431
           |||||| ||||||||
Sbjct: 269 gagggaggaaaaaaa 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)