Query= MSMg01no460_h04.b1 MSMg01no460_h04.b1 CHROMAT_FILE:
MSMg01no460_h04.b1 PHD_FILE: MSMg01no460_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:42 2005
(596 letters)
>mm_chr3_99604316_99605312
Length = 997
Score = 1035 bits (535), Expect = 0.0
Identities = 580/595 (97%), Gaps = 3/595 (0%)
Strand = Plus / Minus
Query: 4 ggaattctatgt-tagcacttgtaggaatgttcctgtattgagtattatgcaggaatagt 62
|||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 797 ggaattctatgtct-ggacttgtaggaatgttcctgtattgagtattatgcgggaatagt 739
Query: 63 ttgatttatctggacttactccagttttcaaattaatttctcagctctgagtaactctag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttgatttatctggacttactccagttttcaaattaatttctcagctctgagtaactctag 679
Query: 123 ccatgtgggtatgtgatggtcatagccacatgctacctaagcctggatttccagttctca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccatgtgggtatgtgatggtcatagccacatgctacctaagcctggatttccagttctca 619
Query: 183 tagattttccactgacagctccaagtggctttttcacttcctccttgcctacctcctcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagattttccactgacagctccaagtggctttttcacttcctccttgcctacctcctcat 559
Query: 243 ctcatgtggcacggactcctgggctctcctgtgtaggtattagggctatagtgcttcagt 302
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctcatgtggcatggactcctggactctcctgtgtaggtattagggctatagtgcttcagt 499
Query: 303 ttgcctgagagccctgtggcttttgtatcatttgcttctttgaatcaagaaaatcatgga 362
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgcccgagagccctgtggcttttgtatcatttgcttctttgaatcaagaaaatcatgga 439
Query: 363 atcctcccattcttttgggcacctgagcatactcattccaggaacttagccctgtaacta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcctcccattcttttgggcacctgagcatactcattccaggaacttagccctgtaacta 379
Query: 423 cttgtgattgttctatttaatgagaaaaaaatatccacatgtctaatatagaaaggactg 482
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 378 cttgtgattgcactatttaatgagaaaaaaatatccacatgtctaatacagaaaggactg 319
Query: 483 act-agtgaagagcctgaacccagttcatcacctttttgacattgtgttctttaaaggtc 541
||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 318 actcagtgtagagtctgaacccagttcatcacctttttgacattgtgttcttcaaaggtc 259
Query: 542 aggcatagtcaatagtatctattttataaaattcttttcttatttaaatgaactc 596
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 258 aggcatagtcaatagtatctattttataaaattcttttcttattaaaatgaactc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space: 578382
Effective search space used: 578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_h04.g1 MSMg01no460_h04.g1 CHROMAT_FILE:
MSMg01no460_h04.g1 PHD_FILE: MSMg01no460_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:42 2005
(540 letters)
>mm_chr3_99449670_99450609
Length = 940
Score = 953 bits (493), Expect = 0.0
Identities = 523/533 (98%)
Strand = Plus / Plus
Query: 5 ctgagtttgcatgacccttgagcctttacagttcttttacttcctgctttctttctcacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctgagtttgcatgacccttgagcctttacagttcttttacttcctgctttctttctcacc 264
Query: 65 cagctcaccctttctccttagcccattcttctcccagtgctctggcatccttgtggatcc 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagctcactctttctccttagcccattcttctcccagtgctctggcatccttgtggatcc 324
Query: 125 tatgcttgcggttcatgctcgggctgctggattttccagtgtgctgttttaatatccttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgcttgcggttcatgctcgggctgctggattttccagtgtgctgttttaatatccttt 384
Query: 185 cccgccattagcgtctatgctcacttccttcactcaatgctaaactgtcggtcttgtggc 244
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccgccgttagcgtctaagctcacttccttcactcaatgctaaactgtcggtcttgtggc 444
Query: 245 cactccctctagagcaagcttttcttcctctagcccagtgctttattttcttttctacct 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 445 cactccctctagagcaagctttccttcctctagcccagtgctttattttctttcctacct 504
Query: 305 gtttcttttaaatatcttggtgtttgtttaccattcatctttctgtttagaacggaaacc 364
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 gtttcttttaaatatcttagtgtttgtttaccattcatctttctggttagaacggaaacc 564
Query: 365 ctgtgatcaatggaacttggccagattgcttcagtgtgttttcccaggatgctaaaagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtgatcaatggaacttggccagattgcttcagtgtgttttcccaggatgctaaaagga 624
Query: 425 tggcaagcagtattttaggttttcatagatatttgttgtataaatgaatggaactaaatt 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggcaagcaatattttaggttttcatagatatttgttgtataaatgaatggaactaaatt 684
Query: 485 taccaaatacttgctatcatgaaatactatatcaacggtcctttagtgccata 537
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 685 taccaaatacttgctatcatgaaatactatatcaacagtcctttggtgccata 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
