BAC Information

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BAC

Clone NameMSMg01-460N16
Chromosome3 (Build37)
Map Location 78,512,905 - 78,513,399
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460N16.T7 (MSMg01no460_n16.b1)MSMg01-460N16.TJ (MSMg01no460_n16.g1)
ACCAG546113AG546114
length729736
length of high quality
(start - end)		496 (57 - 552)406 (69 - 474)
definitionCHROMAT_FILE: MSMg01no460_n16.b1 PHD_FILE: MSMg01no460_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:14 2005CHROMAT_FILE: MSMg01no460_n16.g1 PHD_FILE: MSMg01no460_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TATTCTCAGTAACTCTGATTACTCTGCTACAGTACCATATCTTCCATGCT
TCCTGCCATGATGACAATAGATGTTTAAATCTCTGAACTGTAAGCAAGCC
CCAATGAAATGCTTTCCTTTATAAGAGTTGCTGTGGTTATGGTGTCTCGT
CACAACAATAGAACATTGACTAGGACAGTGTTTCACATGTGAGTCTATGG
GGAAATTTCATATACAGACCATAATATCCCCATGAACATTTATTAATAAA
TACATTTGTGGGTTTTTTCTATTAATGCATTCTTAATTAAGCCATGCAAA
CTTTCAGAGGATGAAGAGAACCTCCACTTATCCTTACAACATCTATAACC
CCAAATGTTATCAACTAAAAATTAGACAAAGAGCTCATATGCACACATAA
TTTTATGGAACTCTACTAAATCCACCATGATCTCAGTATACCTGATCTCA
GAACATTTGGATGACTCAGGCAAAAAGATCATATTTGAACTATATAGTGA
CCCCATCTCCTAAAACAAAACAAACAAACAACTTTTGGGGTGTGTCAAAA
AAGATTTTCTTGACACCTTAGACAGAATGTTGGCCCCCTCTCTGCTAATT
ATTCCAAAAAACATTGTCCTAAAACAATTAAAATCTTTTAAAAGGTAGCC
CATAACTGGAATGGATACACGTAAATAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTC
GTATATTAAACCAGCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATT
CAGGATTTTTGCATCTATATTCATAAGGGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCA
TAGAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGGAATAGTTT
ATGTAGAAGTGGAATTATATCTTCTTTGAAGGTCTGGTATAACTCTGTTC
TAAACCTATTTGGTCCTGTTGCTTTTTTTGGCTGGCCAACTATTTATAAC
TGGTTCTTATTCCTTTTGTTCTTATGTCTTTTCTTTTCATTTCCTCTTTA
ATTCCTTATTCTTTTTTTTATCACTTTTTTTTCCTTTCTTTTTTTTCTCC
CCCTTTCTTTTTTCTTTTCCTCCTCCCCCCTTCTTTTTATATTTTCTCTT
TTTTTCCCCCTATCATCCCCCCTCCTTTATCTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_n16.b1 MSMg01no460_n16.b1 CHROMAT_FILE:
MSMg01no460_n16.b1 PHD_FILE: MSMg01no460_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:14 2005
         (496 letters)



>mm_chr3_78512705_78513599
          Length = 895

 Score =  878 bits (454), Expect = 0.0
 Identities = 486/498 (97%), Gaps = 5/498 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtaactctgattactctgctacagtaccatatcttccatgcttcctgccatgatgaca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagtaactctgattactctgctacagtaccatatcttccatgattcctgccatgatgaca 260

                                                                       
Query: 61  atagatgtttaaatctctgaactgtaagcaagccccaatgaaatgctttcctttataaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagatgtttaaatctctgaactgtaagcaagccccaatgaaatgctttcctttataaga 320

                                                                       
Query: 121 gttgctgtggttatggtgtctcgtcacaacaatagaacattgactaggacagtgtttcac 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgctgtggttatggtgtctcttcacaacaatagaacattgactaggacagtgtttcac 380

                                                                       
Query: 181 atgtgagtctatggggaaatttcatatacagaccataatatccccatgaacatttattaa 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgagtctatggggaagtttcatatacagaccataatatccccatgaacatttattaa 440

                                                                       
Query: 241 t-aaatacatttgtgggt-tttttctattaatgcattcttaattaagccatgcaaacttt 298
           | |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ttaaatacatttgtgggtatttttctattaatgcattcttaattaagtcatgcaaacttt 500

                                                                       
Query: 299 cagaggatgaagagaacctccacttatccttacaacatctataaccccaaatgttatcaa 358
           |||| |||||||||||||||||||||||||||||   |||| ||||||||||||||||||
Sbjct: 501 cagaagatgaagagaacctccacttatccttaca---tctacaaccccaaatgttatcaa 557

                                                                       
Query: 359 ctaaaaattagacaaagagctcatatgcacacataattttatggaactctactaaatcca 418
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctaaaaataagacaaagagctcatatgcacacataattttatggaactctactaaatcca 617

                                                                       
Query: 419 ccatgatctcagtatacctgatctcagaacatttggatgactcaggcaaaaagatcatat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccatgatctcagtatacctgatctcagaacatttggatgactcaggcaaaaagatcatat 677

                             
Query: 479 ttgaactatatagtgacc 496
           ||||||||||||||||||
Sbjct: 678 ttgaactatatagtgacc 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space:   430110
Effective search space used:   430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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