Query= MSMg01no460_n17.b1 MSMg01no460_n17.b1 CHROMAT_FILE:
MSMg01no460_n17.b1 PHD_FILE: MSMg01no460_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:14 2005
(552 letters)
>mm_chr3_83963229_83964177
Length = 949
Score = 980 bits (507), Expect = 0.0
Identities = 540/552 (97%), Gaps = 3/552 (0%)
Strand = Plus / Minus
Query: 1 gtattatatcanatggccagatatgtacttcaagccacagaaccatgtagagaataggtc 60
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 749 gtattatatcaaatggccagatatgtacttcaagccacagaaccatctagagaataggtc 690
Query: 61 aaacggtcctctgggagttcagtgtctggtagcttgatggtaagtgtgtgtgtctattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaacggtcctctgggagttcagtgtctggtagcttgatggtaagtgtgtgtgtctattct 630
Query: 121 tcttaaagaaacttgttaccacagtcctcaaattcaagaaaacacctctcaaacagtgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcttaaagaaacttgttaccacagtcctcaaattcaagaaaacacctctcaaacagtgtc 570
Query: 181 tccctgtgccatatccgagctgtcatgctcatgtcatgttttctacttcagaacagactg 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tccctgtgccatatctgagctgtcatgctcatgtcatgttttctacttcagaacagactg 510
Query: 241 gaactctgatagagagggttagagttagccttacacagagagataaaacaacagaaatga 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaactctgaaagagagggttagagttagccttacacagagagataaaacaacagaaatga 450
Query: 301 gaataaagacccaaattgacatttctggctactgactgtgtaataatatttatttttatc 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 449 gaataaagacccaaattgacatttctggctactgac--tgtaataatatttatttttatc 392
Query: 361 aattcccatctttgtttttcactttttaaaaattattgtttgtttctcatgtagctcagg 420
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct: 391 aattcccatctttgtttttcacttttttaaaattattg-ttgtttcttatgtagctcagg 333
Query: 421 ctggccccgagcttgcacggggcctcctgcttcccacctttcacttttcctcttctccag 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctggccccgagcttgcactgggcctcctgcttcccacctttcacttttcctcttctccag 273
Query: 481 gtatgaaccactgccatcatgggctctctagagtctataaaatttagagaggagcggctc 540
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 272 gtatgaaccattgccatcatgggctctctagagtctataagatttagagaggagcggctc 213
Query: 541 ccatcatctgat 552
||||||||||||
Sbjct: 212 ccatcatctgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 949
Length adjustment: 10
Effective length of query: 542
Effective length of database: 939
Effective search space: 508938
Effective search space used: 508938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_n17.g1 MSMg01no460_n17.g1 CHROMAT_FILE:
MSMg01no460_n17.g1 PHD_FILE: MSMg01no460_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:14 2005
(537 letters)
>mm_chr3_83803851_83804787
Length = 937
Score = 1009 bits (522), Expect = 0.0
Identities = 533/537 (99%)
Strand = Plus / Plus
Query: 1 tggggtcttttcagagggtgtataaatgccagggccctgaaaagtggggtatagaccggt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggtcttttcagagggtatataaatgccagggccctgaaaagtggggtatagaccggt 260
Query: 61 tgctgttggccggttgtgggtcatggtttgttgagtagtcttgctcaaagaagaaacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgttggccggttgtgggtcatggtttgttgagtagtcttgctcaaagaagaaacaag 320
Query: 121 aaggaaaagaaattagatattctgacacaaagatcaaacattgcaggaagtagtctcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaaaagaaattagatattctgacacaaagatcaaacattgcaggaagtagtctcaag 380
Query: 181 aggacataaattccatgaatccacttatatgaaatattaaagtaggtaaatcctgtgtgt 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacataaattccatgaacccacttatatgaaatattaaagtaggtaaatcctgtgtgt 440
Query: 241 ttctatcagttacccatcacaagaacatcccagtaagcattgcttcagttgctaaacctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctatcagttacccatcacaagaacatcccagtaagcattgcttcagttgctaaacctc 500
Query: 301 aattggaccgaataaaattattagaataaccagagctttttttatcctatatttatgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattggaccgaataaaattattagaataaccagagctttttttatcctatatttatgtct 560
Query: 361 ttcattttatttgtgaatcaattggaatgacgctatctaacatatagaatgctatggata 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcatttaatttgtgaatcaattggaatgacgctatctaacatatagaatgctatggata 620
Query: 421 ctctcgatgcctcctgcatttctggttaaaaaataaattttattccggttaaaaagtana 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 ctctcgatgcctcctgcatttctggttaaaaaataaattttattccggttaaaaagtaaa 680
Query: 481 taaatgaggtaattttgtttttctcaacaaagtctcttgcccaggctagtcttgaac 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatgaggtaattttgtttttctcaacaaagtctcttgcccaggctagtcttgaac 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
