BAC Information

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BAC

Clone NameMSMg01-461J19
Chromosome3 (Build37)
Map Location 129,034,304 - 129,034,549
singlet/doubletsinglet
Overlap geneEnpep
Upstream geneLOC100043393, EG668831, Pitx2
Downstream geneLOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461J19.T7 (MSMg01no461_j19.b1)MSMg01-461J19.TJ (MSMg01no461_j19.g1)
ACCAG546694AG546695
length784789
length of high quality
(start - end)
246 (73 - 318)338 (70 - 407)
definitionCHROMAT_FILE: MSMg01no461_j19.b1 PHD_FILE: MSMg01no461_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:16 2005CHROMAT_FILE: MSMg01no461_j19.g1 PHD_FILE: MSMg01no461_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCTATGATTTGGCGGCGGTAAANGAATATTATATGCCAGAGAATGCGCG
GAATTCTCTTCTTTTCGCCTTGTATTTACAACTTCGAGTTGGTGATACAT
TTTCAAATTACAAGAAGGCAAAACATCTTACTTCTCAGATGAACAAGCAG
AATTGAAAGCAAGGGCAGATAGGGATCAGACCCACAAAACACAAGAGATG
GGAAGCAAAGAGAAAAGGCAAAAATAAACACTGCAGAAACTGGGTTCAGA
GGAAGCACCACACAGCTCTGTATTGCACCGCACACAGAACAACACAGCAC
AGCACCACACTGCATCACACCTCTTCCCACCACACACAGCATAACACAGC
ACCACACTGGACACAGTAGCACATACAGCACAGCACCGCACCGCACACTG
AACATAACAACACTACTCAACACAACACAGCACAGCACCACACTGTATCA
CACCTCGTCCCACCACACGCAGCATAACACAGCTCTGTCCTACACACCGG
ATCACACTCTGCACCCTTCAGCACTTACCTGATTTTGCCCGCCCTCCACG
TAAGGGGGTTTTGAATAAACCCCCCAGGTTAACTGGTTATCCCTCCCTTT
AATATCCATTGGTCGGCCCATATTAACCGGGCCCCCCCCTGGGTGCCGCC
TAGGCCCCTCTTTTATCTTGGTTCTCCAACTCATCTCCGTTTTCTTTTAT
TCTCTTAAATCCCCGCCCAGAATTGGTTTATCTGTTTCTCCTAATATTTC
TCCCTCTCTTATCTTTCCCTCTCGTTGTCTATTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGATTAAGATAGGGAGATCTCCGAGTTCAA
GGTCATCTGGGCTACACCTTTCATCGGGGATTAAAGGTGTGGTGGGACAC
ACCTTTAATGTGGGCTACACTTTCTGCTGGAGACCTACATAAGGACATTG
GAAGAAGGAAGACACACACACACACACACACACACACACACACACACACA
CACACTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCTCTCTCCCCCT
CTCTCCCTCTCTCTTTTCTGCTTGTGGTGTGGGACTGAGCAACTGCTAGA
TCCTTTGTCTTCCATTCACATCTGCTGCTGACCATTGTTGGCAGTTAGAC
TGCAGACTGTAACTCATCAATAAATTCCTTTACTATATAGAGACGATCCA
TAAGTTCTGTGCCTCTAGAGAACTCTGACTAATATACCATTCCTAAAGAG
ATGTATGGTGGCCTTATTAAAAAGGGAACTAAACTCAGCCTTCTCACCCC
TGTCTCTCAAAATTAATCCCCCCACAAGGCAGAAAACCTTGTTTCCCACA
GGGAATAGTTTTTCTTCCCGTTCCCCTCTTGGTGCTACTGTAACTCCCCC
ATATATTTTGTTCGTTATCCACCCGCTTTTTATAACCTCTAACTGACTCT
CCTTTTTACCCCTGTTCTCCTCATTTTCCTTCCCTCGTTAGCCGCCTGTT
CTTTCTCTTTTCTCTTCCTCCATATCTTTTGTCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_j19.b1 MSMg01no461_j19.b1 CHROMAT_FILE:
MSMg01no461_j19.b1 PHD_FILE: MSMg01no461_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:16 2005
         (246 letters)



>mm_chr3_129034104_129034749
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttacaacttcgagttggtgatacattttcaaattacaagaaggcaaaacatcttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttacaacttcgagttggtgatacattttcaaattacaagaaggcaaaacatcttact 260

                                                                       
Query: 61  tctcagatgaacaagcagaattgaaagcaagggcagatagggatcagacccacaaaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagatgaacaagcagaattgaaagcaagggcagatagggatcagacccacaaaacac 320

                                                                       
Query: 121 aagagatgggaagcaaagagaaaaggcaaaaataaacactgcagaaactgggttcagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagatgggaagcaaagagaaaaggcaaaaataaacactgcagaaactgggttcagagg 380

                                                                       
Query: 181 aagcaccacacagctctgtattgcaccgcacacagaacaacacagcacagcaccacactg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcaccacacagcactgtattgcaccgcacacagaacaacacagcacagcaccacactg 440

                 
Query: 241 catcac 246
           ||||||
Sbjct: 441 catcac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)