BAC Information

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BAC

Clone NameMSMg01-462I04
Chromosome3 (Build37)
Map Location 23,829,207 - 23,829,716
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462I04.T7 (MSMg01no462_i04.b1)MSMg01-462I04.TJ (MSMg01no462_i04.g1)
ACCAG547380AG547381
length725771
length of high quality
(start - end)
510 (80 - 589)442 (76 - 517)
definitionCHROMAT_FILE: MSMg01no462_i04.b1 PHD_FILE: MSMg01no462_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:33 2005CHROMAT_FILE: MSMg01no462_i04.g1 PHD_FILE: MSMg01no462_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCAATCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAG
AATCCGCGGAATTCATATGCACTATCCTGTATACAGACGAATATAGTTAC
AGGTTAAAAATAAATCTTTATTAAACATCATACTCTACATCATGGCTAAA
ATTGATCACTAAACTGAACAATTATGCTGTTGAAGGTTTATGGTGAAGAC
AAGGCTGAAAAAAATGGAATGTAGGAAGTCTGTGGCACAGCTTCCAGATG
AGTGGTAGTAATGCAAGGTAGTAACAACTGAACAATCTCTGAATAATATA
AAACTACATGGTTAGTGATAAATGAAACAAATTAGGATATTAAAACGATC
ATATTCAAGTAACTTTCTATACAGCAATCATGTATATTAACACACACTTT
ATATTATTTAGCAACCACTAAAATAATATTAAATAACTATGAAAAAAGTG
ATCAATCCTTTAAAATAAAGAACAATTGTTTTCTTTACAGATTTGAATAC
AAATATAGCTATATATGATAAAAGTCATATATAAGAGTAATTTAGAGAAA
AGCAAAAATCTTCTGTAGCTTATTGATGGGTTTTCTATCTTCTCTACTTC
CCCTAGGGACCACTGTCTAATTCTGAAGAATATGAAATTTCTTAAATGTG
TGAATTAATTCTAATGGAATCAGAGCATTTTTGTAACTGTCAAATATTTG
AGATGATTTGTGGTTATATTTTTAA
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTAGAATTTTTGTGTGTGGAA
CAGGTTAATGGCTGGAGGTAAATGGAGGGGAGAACTGGCAAGGAGAGAGA
ATGGGGAGGAAAATAGTAGGGGCAGAATCGGGTACTGGAGTGGACAAGAG
AGAGGTACAGAGCGTTAGGGTGAGTAACTGGGGGTAGCCATTGCTGGGTC
CCAGACACCTGGGGAAACAAGAGGTTCCCATTACCCAGCTGGGATTACTT
TAGCTAAGATGGGCAGCCAAGTGGAGATAGAACCTCTAGAGACCATCACC
AGGAGATAGACATGGCCCCTAGTCAAGGGATTGGGCCACCCACCGATCTC
AAAATTGTTATCCCAGAAATGTTCCCATCCAAAGGAAAGGCAGGGACAAA
AAAAGTGGAGCAGAAACTAAAATAAGGACCAGCTAGGAACTGCCCCACTT
GAGAATCCAGTCTGTGTGCAGATACCAAATCTGGACAGTGTTGCTGTTGC
AGAGGTGCTTGCTGACTGGAACCTGGTGCGTCTGTTCCCTGGGAGGTTCT
GACTGCCCCTGATTCCTGCATTGGCCATATGCTTGTTATCCTTTTTATAG
GATGTGCCTTGGGATCCCTGTTCTCTCCGCTGTCGGCATGCCCTCTTTTT
TTTCCTTTCGATTTTTTGCTCTTCCCCCTTGTATATTACCCTGTTGTTCT
TGCGCGCGCTCTTATCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_i04.b1 MSMg01no462_i04.b1 CHROMAT_FILE:
MSMg01no462_i04.b1 PHD_FILE: MSMg01no462_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:33 2005
         (510 letters)



>mm_chr3_23829007_23829916
          Length = 910

 Score =  888 bits (459), Expect = 0.0
 Identities = 498/511 (97%), Gaps = 2/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacagacgaatatagttacaggttaaaaataaatctttattaaacatcatactctaca 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 710 tatacagacgaatatagttacagattaaaaataaatctttattaaacatcacactctaca 651

                                                                       
Query: 61  tcatggctaaaattgatcactaaactgaacaattatgctgttgaaggtttatggtgaaga 120
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 650 tcatgactaaaattgatcactaaactgaacaa-tatgctgttgaaggtttatggtgaaga 592

                                                                       
Query: 121 caaggctgaaaaaaatggaatgtaggaagtctgtggcacagcttccagatgagtggtagt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 591 caaggctgaaaaaaatggaatgtaggaagtctgtggtacagcttccagatgagtgatagt 532

                                                                       
Query: 181 aatgcaaggtagtaacaactgaacaatctctgaataatata-aaactacatggttagtga 239
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 531 aatgcaaggtagtaacaactgaacaatctctgaataatatagaaactacatggttagtga 472

                                                                       
Query: 240 taaatgaaacaaattaggatattaaaacgatcatattcaagtaactttctatacagcaat 299
           ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 471 taaatgaaacaaattaggatattaaaatgatcatattcaagcaactttctgtacagcaat 412

                                                                       
Query: 300 catgtatattaacacacactttatattatttagcaaccactaaaataatattaaataact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 catgtatattaacacacactttatattatttagcaaccactaaaataatattaaataact 352

                                                                       
Query: 360 atgaaaaaagtgatcaatcctttaaaataaagaacaattgttttctttacagatttgaat 419
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 351 atgaaaaaagtgatcaatcctttaaaataaagagcaattgttttctttacagatttgaat 292

                                                                       
Query: 420 acaaatatagctatatatgataaaagtcatatataagagtaatttagagaaaagcaaaaa 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 acaaatatagctatatatgatgaaagtcatatataagagtaatttagagaaaagcaaaaa 232

                                          
Query: 480 tcttctgtagcttattgatgggttttctatc 510
           ||||||||||||||||||||| |||||||||
Sbjct: 231 tcttctgtagcttattgatggtttttctatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)