Query= MSMg01no462_m09.b1 MSMg01no462_m09.b1 CHROMAT_FILE:
MSMg01no462_m09.b1 PHD_FILE: MSMg01no462_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:53 2005
(398 letters)
>mm_chr3_99863406_99864203
Length = 798
Score = 746 bits (386), Expect = 0.0
Identities = 395/398 (99%), Gaps = 1/398 (0%)
Strand = Plus / Plus
Query: 1 agttgaaatatctctagaaccacaccaagaggtgtctaaaagcagaaatacagatctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgaaatatctctagaaccacaccaagaggtgtctaaaagcagaaatacagatctgga 260
Query: 61 actgagaagggaaaatcatgcctactgtggccattgtagagtcaacacatagataatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgagaagggaaaatcatgcctactgtggccattgtagagtcaacacatagataatatt 320
Query: 121 tgaacccctaattgcgaataagatcgttacatctaatatatgcacagaccaaactatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacccctaattgcgaataagatcgttacatctaatatatgcacagaccaaactatata 380
Query: 181 taacgatcacatacggtgttgcatacatgtgcctatctggacttctgcccctgtaaaaca 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaatcacatacggtgttgcatacatgtgcctatctggacttctgcccctgtaaaaca 440
Query: 241 gattctgtaagtcagggagacttgggcatctgtttaattccctgagtaattattatggta 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattcagtaagtcagggagacttgggcatctgtttaattccctgagtaattattatggta 500
Query: 301 gccaaacttgagaacatagtgtaacctgagacctggaagcatcttcaagacttaaaatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaaacttgagaacatagtgtaacctgagacctggaagcatcttcaagacttaaaatgg 560
Query: 361 agaaggggtggggggggtgaccagaaaggtcaggagag 398
|||||||| |||||||||||||||||||||||||||||
Sbjct: 561 agaagggg-ggggggggtgaccagaaaggtcaggagag 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_m09.g1 MSMg01no462_m09.g1 CHROMAT_FILE:
MSMg01no462_m09.g1 PHD_FILE: MSMg01no462_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:53 2005
(477 letters)
>mm_chr3_99926567_99927443
Length = 877
Score = 733 bits (379), Expect = 0.0
Identities = 400/411 (97%), Gaps = 8/411 (1%)
Strand = Plus / Minus
Query: 71 gccatatagtaaaagattggtgttaacccatggcactatcaggagctgagagaacggtaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gccatatagtaaaagattggtgttaacccatggcactatcaggagctgagagaacggtaa 818
Query: 131 ggaagccaggtggtagtggtgcatgcttttaatcccagcactcacggagacggctgtcag 190
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 817 ggaagccaggtggtagtggtgcatgcttataatcccagcactcacggagacggctgtcag 758
Query: 191 ttatgaggccagcctggactatacagtgagttccaggacagcaagagctacgc----ata 246
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 757 ttatgaggccagcctggactatacagtgagttccagggcagcaagagctacgcagagaaa 698
Query: 247 ttttccctgtctcgaaaacaacaacaacaaaaaccttatggatctggacttagtgcaaag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ----ccctgtctcgaaaacaacaacaacaaaaaccttatggatctggacttagtgcaaag 642
Query: 307 caatgaggtcattgaagggggtgtgggctccttttctgtttctctgcttcctggcagcca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caatgaggtcattgaagggggtgtgggctccttttctgtttctctgcttcctggcagcca 582
Query: 367 tcaagagagcattttgctctcccatgtgtccctgtcctgatactccacagaccctgaaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcaagagagcattttgctctcccatgtgtccctgtcctgatactccacagaccctgaaaa 522
Query: 427 cacagggccaagtgattacaaagtgacacccctaaagctgacacaaaggca 477
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cacagggccaagtgattacaaagtgacacccctaaagctgacacaaaggca 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
