BAC Information

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BAC

Clone NameMSMg01-462P15
Chromosome3 (Build37)
Map Location 117,020,096 - 117,020,671
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
Downstream geneD3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462P15.T7 (MSMg01no462_p15.b1)MSMg01-462P15.TJ (MSMg01no462_p15.g1)
ACCAG547737AG547738
length1,089726
length of high quality
(start - end)
---575 (83 - 657)
definitionCHROMAT_FILE: MSMg01no462_p15.b1 PHD_FILE: MSMg01no462_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:10 2005CHROMAT_FILE: MSMg01no462_p15.g1 PHD_FILE: MSMg01no462_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGCATCTAAGCATATACAATTAATAGCTTTATATGTGTGTTCTTCCCCT
CTACCTGCCTTCTTTTCCTCCTTTTTTCCCTCTCCCCTACGTGTACTCGA
TCTTCCCCTTCCATCTCTCTTATCGCTTCAACCTTATAATACTAATCCCA
TTCTCCTCTCGCTGCTACTCTCTTGCTGGGTCTGTCTCCTTATCTTCTTT
ATATTATTGCATGCCCCTAGATCCTTTGTTTTATATCTTTCCTCTTCTCT
TAGTCTACGTATAGACTGGCCGGACGGCGCGGACGTAACTCTTTTACGGC
CTCTAATGTGCTAGAGCGATCGAGTGAAGATGATAGATAGAGGAGGAGAT
CTAGTGTCGATAATAGATGGTTGCAGAGCCGGTGGATATGACAGATGGAT
GATGATGAGACGATCGGACAAGAGATCGTCTTGCGCTAGCTATCACATGT
TCAATACTGAAGAACCGTGTCTGCGGCACTACTACTATTAGATAATAACG
TAATTAATTTACAACCCGTATAGATACACGTTTTGCTTCCGCGTTATGTG
AATTCTCGATAATACCGTGTTGAACGATTGGATCAATATGTAAGAGCACA
TACGCCTCCCACGTCATAGTCATAGATCCTATAAACCACACTATATCTCG
TGTTGTATCATTATGCCGAATAGCACAGAAGGATATGTATATCGATAGTA
TGCACGCTGCGCGATTTCGATGATAGACCACATCGAGTTTGTATCTCGCG
CTACTGGCACTGTGATATAGCGGGAGATTGTTGGGTAGTATCTGCTATAC
CGTTCTTTATGCATATATATCCGAGTTCCACTACTGTTGCTAGCGTCTTC
TCGCTCCTGTATCAGTATACATGTTCGACCATTTACCTGTCTATCCCACT
ACTCTTCCTACCCGTAATCCAATGTCTTGCACCTACTCCTTCAGCATCGC
CGCCGATGGCTCGTCTCGTCTCAGAGTCGCCGCGTAGCTAATCGCTGTAT
CTGACACTGCTACTCTTTATATCTCTCGTCTCCTCTGCTCACTCGTTGAC
AGGCACATGACGCATCAGTATACTACTGACTGGCGCGCN
TTCTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTAACCACTCTTTCCA
GTTGCAAGAAAATATCTAAGTGAGAGGTTAATAAAGAGATGAGCCACTAC
AGTACTCAGAAAATGTAGTCAGAGGTTCCTAACTGTGATGATCCATTCCT
CATGTGCAGTTAATGTCCGAGACTAGAGAACTGGGGTTAACCATAGCTCT
GGCATTAATTCCATGTAACAAGCATGGTGTGCCCATTTCTTCTCCTTTCA
ATGCCTATTGTTTTTAGATCTTCTGTCATTGCTGTGAGGAAATCTATCAA
AAGTCTAAAGTTCTCCTTATAGAACAGTACCACAGACATTTAAATGAATG
AGCGAGAAAAAAATGTGAATGTGTTAGAGTCATACGAAATTAACCCTTTC
CCTTGATTACTTCAGGGTGCCCTGTAGGGAAATAAAGGCTACTCCCTTGT
TAGGAACTGAGATGTTCCCTAGGATAGTTAGCCTGTCTTCTCCCCATGCA
TAGNAATCCACCTTTTAGCCTTTGGTGTCTGGACACATGCCATTTTGGAA
TTTAGGGAAAACATAATTTACTCCTCCTTTGGGGTCAATTTTCCCCACTG
TGGAACTAAGTTAATAATGACAGACTTTGCAAAAATTCCATGAGAAGAGC
TTGAACACCTAAGTATAACATATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_p15.g1 MSMg01no462_p15.g1 CHROMAT_FILE:
MSMg01no462_p15.g1 PHD_FILE: MSMg01no462_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:10 2005
         (575 letters)



>mm_chr3_117019896_117020871
          Length = 976

 Score =  951 bits (492), Expect = 0.0
 Identities = 556/579 (96%), Gaps = 7/579 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtaaccactctttccagttgcaagaaaatatctaagtgagaggttaataaagagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cagtaaccactctttccagttgcaagaaaatatctaagtgagaggttaataaagagatga 717

                                                                       
Query: 61  gccactacagtactcagaaaatgtagtcagaggttcctaactgtgatgatccattcctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 716 gccactacagtactcagaaaatgtagtcagaggttcctaactgtgatgatccattcctc- 658

                                                                       
Query: 121 tgtg--cagttaatgtccgagactagagaactggggttaaccatagctctggcattaatt 178
            |||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 657 -gtggacagttaatgtccgagactagagaactggggttaaccgtagctctggcattaatt 599

                                                                       
Query: 179 ccatgtaacaagcatggtgtgcccatttcttctcctttcaatgcctattgtttttagatc 238
           ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 598 ccatgtaacgagcatggtgtgcccatttcttctcctttcaacgcctattgttttcagatc 539

                                                                       
Query: 239 ttctgtcattgctgtgaggaaatctatcaaaagtctaaagttctccttatagaacagtac 298
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 538 ttctgtcattgctgtgaggaaatctatcaaaagtctaaaattctccttatagaacagtac 479

                                                                       
Query: 299 cacagacatttaaatgaatgag-cgagaaaaaaat-gtgaatgtgttagagtcatacgaa 356
           |||||||||||||||||||||| | |||||||||| |||||||| ||||| |||||| ||
Sbjct: 478 cacagacatttaaatgaatgagtc-agaaaaaaattgtgaatgtattagattcatacaaa 420

                                                                       
Query: 357 attaaccctttcccttgattacttcagggtgccctgtagggaaataaaggctactccctt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 attaaccctttcccttgattacttcagggtgccctgtagggaaataaaggctactccctt 360

                                                                       
Query: 417 gttaggaactgagatgttccctaggatagttagcctgtcttctccccatgcatagnaatc 476
           |||| |||||||||||||||||| |||||  |||||| ||||||||||||||||| ||||
Sbjct: 359 gttatgaactgagatgttccctaagataggaagcctggcttctccccatgcatagtaatc 300

                                                                       
Query: 477 caccttttagcctttggtgtctggacacatgccattttggaatttagggaaaacataatt 536
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 299 caccttttagcctttggtgtctggatacatgccattttggaatttagggaaaacataatt 240

                                                  
Query: 537 tactcctcctttggggtcaattttccccactgtggaact 575
           ||||||||||| |||||||||||||||||||||||||||
Sbjct: 239 tactcctccttcggggtcaattttccccactgtggaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space:   545790
Effective search space used:   545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)