BAC Information

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BAC

Clone NameMSMg01-463C20
Chromosome3 (Build37)
Map Location 49,138,971 - 49,139,183
singlet/doubletsinglet
Overlap gene4932443G14
Upstream gene1700018B24Rik, LOC100039404, EG666230
Downstream geneLOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463C20.T7 (MSMg01no463_c20.b1)MSMg01-463C20.TJ (MSMg01no463_c20.g1)
ACCAG547890AG547891
length744824
length of high quality
(start - end)
214 (83 - 296)179 (85 - 263)
definitionCHROMAT_FILE: MSMg01no463_c20.b1 PHD_FILE: MSMg01no463_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:28 2005CHROMAT_FILE: MSMg01no463_c20.g1 PHD_FILE: MSMg01no463_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTTCTCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAG
AACCCGCGGAATTCACAATGCTTTTCCTATGTAACTGATAATTATATGTT
GAATAAGTTAGACCTCATTGATATTTGACACATTCCCAGTTTCTTATAGT
CATCAAAATTATCTTGTTGATCAAAGTTTTTCTTATCCAAATAGCAACAC
TTACCCAATGAACTCTTCCCCATGTTGAAAACCCTTTGTCACATATAGTT
TTTCCATCTGTAAGCTAATGTGTACTTTGTTTCCTCACTCCTGAAAAAAA
TTATCCATGCTGCAAAGATCTTCTCTCCCCCAGAATTTTCTTCTCCTTNN
NNTTCCCATCTATAACTCAAGCAGATTGCCTTTCGACCTATGNGACTGAT
GCTTGCCCAAAGACTGACACATTCATGTTTCTACCATTAACTGCTCATCC
ACTTCATTCTCTGCCTACAACCATTGTTATCAAAAAGNTTGGATTATGCC
TGTGCACCTCAACCTACACCCATACACGCACACATACACGCAAACATACA
TTCAAAAATAAAATAATAGGGGTGGGTGGAACACCTAAATGGGGTGGGGT
ATATTATTTCCCTACTCCGTATCTTTTTTTTTTGTCTTTTCCTATTTCTT
TTTTTCCTTCCTGTCTTGTCGTTCTATCATCAATCTTCCCTTTCCTTTTA
TTCTAACATACTAATAACTCATAATTCCCCCTCTTTCTAACATG
NCTTCTAATAATCGATGCTGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCATTCTAAGAT
TTTTATAATAAAGGGGTGTTGGACTTTGTCGAATACTCTCACAGCATCTA
ATGAGATGATCATGTGGTTTTTGTCTTTGAGTTTATTTATATAGTGGATT
ATGTTGACAGATTTCTGAATATTGAAGAATCCTTCCATCCCTGGAATGAT
TCATTCTTGATCTTGATGGATGGTCATTTTTATGTGTTCTTAACTTCAGC
TTGCCAGAATTTTACTGAGTATATTTGCATCTATTTTTTTAAGGCAAATT
GCNCCGAAGTTTCCTTTCTTTGGTGTTTTCTTTGAAAGGGATAATGGACC
CCAAATAATTGTTTGTTTTTTTAAAAATTAATTGGGGCACCATACCCCTA
CCTGTTTTCATTTTTTGTGTAATATTTTTGGAGTATTATTTTTGCAAATT
ACTTTCTTTTCTTTTTTCTCTTTTTTATTTTTACTTTTTTCTTTTCTCAT
TCCTCTATTCCCGTTTCTCTTTTCTCCTCTCTTTTTTCCCTAAACTCATA
ATAATTTCTTGATTATTTCTTTCTATCTTCTCCTTTTCACCTTTCAGTTC
GATTACTTTGTTTTGCTACTAAAATTCTTCTTTTTTTTATCTACTCTTCT
CTCTCTCTTCTTTTCTTATTCTCTCGCCTCTTTTTCGCTCTATATTTATT
CCATTTCACCTCTTCTCCTTTTTCTTCTACTTAATTATACTTTTATTAAT
ACTTATTATTATTTAAACTTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_c20.b1 MSMg01no463_c20.b1 CHROMAT_FILE:
MSMg01no463_c20.b1 PHD_FILE: MSMg01no463_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:28 2005
         (214 letters)



>mm_chr3_49138771_49139383
          Length = 613

 Score =  406 bits (210), Expect = e-118
 Identities = 213/214 (99%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgataattatatgttgaataagttagacctcattgatatttgacacattcccagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aactgataattatatgttgaataagttagacctcattgatatttgacacattcccagttt 354

                                                                       
Query: 61  cttatagtcatcaaaattatcttgttgatcaaagtttttcttatccaaatagcaacactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cttatagtcatcaaaattatcttgttgatcaaagtttttcttatccaaatagcaacactt 294

                                                                       
Query: 121 acccaatgaactcttccccatgttgaaaaccctttgtcacatatagtttttccatctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acccaatgaactcttccccatgttgaaaaccctttgtcacatatagtttttccatctgta 234

                                             
Query: 181 agctaatgtgtactttgtttcctcactcctgaaa 214
           ||||||||||||||||||||||||||| ||||||
Sbjct: 233 agctaatgtgtactttgtttcctcact-ctgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 613
Length adjustment: 9
Effective length of query: 205
Effective length of database: 604
Effective search space:   123820
Effective search space used:   123820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)