BAC Information

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BAC

Clone NameMSMg01-463F13
Chromosome3 (Build37)
Map Location 51,545,885 - 51,751,058
singlet/doubletdoublet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463F13.T7 (MSMg01no463_f13.b1)MSMg01-463F13.TJ (MSMg01no463_f13.g1)
ACCAG548020AG548021
length749800
length of high quality
(start - end)		587 (52 - 638)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no463_f13.b1 PHD_FILE: MSMg01no463_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:43 2005CHROMAT_FILE: MSMg01no463_f13.g1 PHD_FILE: MSMg01no463_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,750,476 - 51,751,058)(51,545,885 - 51,546,224)
sequence
NTTTTAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGTCCCTCCTTTGCAGCTGGGCAGCTGTGAGGCCCAGT
GGGTGATTGGCTCCCCAGCCAGCTGTAAGGTGATATCTGGCCACAATCCC
TATCCCTTCTCAGTTTTTCTGTTTCCTTATTCCATGCTTCAGTTTCTCCA
AATTTCTGTAGGAACAGAAAAGAGCACAGAAACACCCTCTCGGGCTCATC
CGAAGATGTAACCTAAATTTTCCTCGCTAGCGTAATCTTTCGTGAAGGAC
ATTTACACTAAAAAGGTTATCACTTTATCATAATCTGGGGCTTGCTGTCG
GGTGAATTCGGCCAGACTTTCTCCCTTTCAACATTGCTGATGTGTTAAAT
TAAAGACCTCTGTGTAGCAGGAGCTGCACTTTGTATCATAGAGTGTTCAG
TTGCACCTAGTGTTATTCTCTGGGGTGGTTATAATAAAATACCATAACCG
GGTAGCTTTTAAATGCCAGGAAATTATTTCTTTCAATTCTAGAGGTCAAA
GTTGAAGATCAAGGTCAGAATCCAGTGTCCAGTGAGTCTCTGCTTCCATA
CCGCAGGGATGTCAGTTAGCAATGGTTTCTCATGAAGGGGAGTAGACTGC
TCTCTGGACGATCTGTAAGGGCACTAACCCCACTCATGAGACTCCACTCT
CCTAAGCTAACAGCTTCCACTGTTAGACTCCACCGATGCCTGAGCAGGG

TTCCACATGCTATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGCAGAGTGTATGTGTGCAG
CTGTCTTGATTGTTCACTGACACAGAAAGGCTAGCGCCCACTGCGGGCAG
CTCCGGCTCCATGTAAGAAGGCGTATAGACCATGCTGCTAGCGGGCAGCG
TCCTCTGGCTCCTGCAGTAAGCACTTCTGGGTTGGGAAGTGAGTTCCTCG
GTGGATGTGGTGCTGTGTGGAACAGCTAGCAGGCCTGCCCGCTAGCTCTT
GATGGAGTACCTCCCTCAATTTTTTCTGTGATCTGGAGTTGTAGGCGGGC
ATAAACCCTTTCCTTTCCTAAGGGGCTTTGTGCAGCATATTCAGGTCAGA
TGGCTTATTTTGGAAGGCAAAGATTAAGGATGATGGGGAAAGGTTTGGAC
GCAGTATCGTTTTATATCCTTTCGCACTTTACGTTTTTCATATCACTTTG
ATTTTCTCCCTTTCCCCCCTTCATTCATCTTTTTCCCCTCCGCTTTAAAT
TTCTGTTTTTTTCTCTACTTCTCTACCTCCTTTCTTTTTCTTCCCCTCTC
TTTTCTTCTCTCCTTCTCCATTTTTCTATCTCATCCATACTCACTCCCCT
ATTCATTTCCTTTCTCCACATCTCCCAGTCTCTTTTCTTTAATTTCACTA
TATCACCCTCCTCTTTTCACTCTCTATTTCCTCTATCCTTCCCTACGCCT
TTCTTTATTTCAATTTCTCCCTCATACACTGCCCCGTTCTGCTCGTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_f13.b1 MSMg01no463_f13.b1 CHROMAT_FILE:
MSMg01no463_f13.b1 PHD_FILE: MSMg01no463_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:43 2005
         (587 letters)



>mm_chr3_51750451_51751437
          Length = 987

 Score = 1027 bits (531), Expect = 0.0
 Identities = 570/583 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtccctcctttgcagctgggcagctgtgaggcccagtgggtgattggctccc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaattcaggtcccacctttgcagctgggcagctgtgaggcccagtgggtgattggctccc 549

                                                                       
Query: 65  cagccagctgtaaggtgatatctggccacaatccctatcccttctcagtttttctgtttc 124
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 548 cagacagctgtaaggtgatatctggccacaatccctatcccttctcagcttttctgtttc 489

                                                                       
Query: 125 cttattccatgcttcagtttctccaaatttctgtaggaacagaaaagagcacagaaacac 184
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctgattccgtgcttcagtttctccaaatttctgtaggaacagaaaagagcacagaaacac 429

                                                                       
Query: 185 cctctcgggctcatccgaagatgtaacctaaattttcctcgctagcgtaatctttcgtga 244
           |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 428 cctctcgggctcatccgaagatgtcatctaaatgttcctcgctagcgtaatctttcgtga 369

                                                                       
Query: 245 aggacatttacactaaaaaggttatcactttatcataatctggggcttgctgtcgggtga 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aggacatttaaactaaaaaggttatcactttatcataatctggggcttgctgtcgggtga 309

                                                                       
Query: 305 attcggccagactttctccctttcaacattgctgatgtgttaaattaaagacctctgtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 attcggccagactttctccctttcaacattgctgatgtgttaaattaaagacctctgtgt 249

                                                                       
Query: 365 agcaggagctgcactttgtatcatagagtgttcagttgcacctagtgttattctctgggg 424
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 248 agccggagctgcactttgtatcacagagtgttcagttgcacctagtgttattctctgggg 189

                                                                       
Query: 425 tggttataataaaataccataaccgggtagcttttaaatgccaggaaattatttctttca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tggttataataaaataccataaccgggtagcttttaaatgccaggaaattatttctttca 129

                                                                       
Query: 485 attctagaggtcaaagttgaagatcaaggtcagaatccagtgtccagtgagtctctgctt 544
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 128 attctagaggtcaaagttgaagatcaaggccagaatccagtgtccggtgagtctctgctt 69

                                                      
Query: 545 ccataccgcagggatgtcagttagcaatggtttctcatgaagg 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ccataccgcagggatgtcagttagcaatggtttctcatgaagg 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no463_f13.g1 MSMg01no463_f13.g1 CHROMAT_FILE:
MSMg01no463_f13.g1 PHD_FILE: MSMg01no463_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:43 2005
         (340 letters)



>mm_chr3_51545685_51546424
          Length = 740

 Score =  603 bits (312), Expect = e-177
 Identities = 333/340 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagagcagagtgtatgtgtgcagctgtcttgattgttcactgacacagaaaggctagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagagcagagtgtatgtgtgcagctgtcttgattgttcactgacacagaaaggctagcg 260

                                                                       
Query: 61  cccactgcgggcagctccggctccatgtaagaaggcgtatagaccatgctgctagcgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccactgcgggcagctccggctccatgtaagaaggcgtatagaccatgctgctagcgggc 320

                                                                       
Query: 121 agcgtcctctggctcctgcagtaagcacttctgggttgggaagtgagttcctcggtggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcgtcctctggctcctgcagtaagcacttctgggttgggaagtgagttcctcggtggat 380

                                                                       
Query: 181 gtggtgctgtgtggaacagctagcaggcctgcccgctagctcttgatggagtacctccct 240
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gtggtgctgtgtggaacagcaagcaggcctgcccgctagctcttgatggagtacttccct 440

                                                                       
Query: 241 caattttttctgtgatctggagttgtaggcgggcataaaccctttcctttcctaaggggc 300
           |||   |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggatggctgtgatctggagttgtaggcgggcataaaccctttcctttcctaaggggc 500

                                                   
Query: 301 tttgtgcagcatattcaggtcagatggcttattttggaag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtgcagcatattcaggtcagatggcttattttggaag 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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