NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACAATATTGTCAAATTTTATAGCCAAACAAGTTGAATTT
TATAGCAAGGTATAGAGTGTAATCCACCTCCTGCTCCAACTGCTAGCTCC
CTCTTGAACTGTGCTGAGCAGATAAAGCAAAGCTGTGATAAACTCCTTCT
CTCACACTGGAATAGATTCAGAGTTCTTAGTGTAAATGTGGGTAGTTTAC
TTTTCTTTTCCAGATATCAAGCCCTAACTATCTTGGGCAAAATCTCTGCT
TCTAATATTGTAACAGGAAAACAAACCAACAAACCAACAAAAAACAAAGG
AGTGTACCTTATTGAAATAAACATAAAGGATCAGCGATAGCCTAGAGGTT
GATTTTCCTTTCTGACATCAGCGGTATAATTCAGATGAACAATACTGTTT
ATATATTTGTAAGTTTGGTATAAGCTAGTTACAGTTCATCAAACTAAAAT
CATAGAAATAGCTGCCTATAAGCCAAAGGTTGAACCCCATATTAATTTGG
AGATAAGTGCTACAAAATAAGTTTAATGATTTTTCTTTTATTTTTGAGAT
TGTAACATAATTACATAATTTCCTCATTCCCCCCATCTCTTGCAACTATC
CTATATACCCTCCTTTTTCTCTTTCAAATTCATTAGTTTTTCCACTAAAT
TTTATTAAATAAAAATATGTAATTATATATATGCATACATGCCATTTGGG
CTCT

NNNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATAGCTCTGCACCCA
TTTTAATAGGGTTATTTGGTTCTCAGGAGTCTAACTTGCTGAGATCTTTG
TATATATTGTATATAGGCTCCCAATTGGATTGAGGATTGGTAAAGATCTT
TTCCCAATCTGTTGGTTGCCTTTTGGTCTTATTGACAGTATCCTTTTAAT
TATAGAAGTTTTGCAATTTTATGTGGTCACACTTGTTGATTCTTCATCTT
ACAGCATATACCATTTGTGTTGTGTTCAGAAAAATTTCCCATGTGACCAT
ATTTTCAAGGTTCTTCCCAATTTCTCCTCTATAATTTTCATGTAAATTTG
ATTTTATGTGGAGGTCTTTGATCCACTTGAACTTACGCTTTGTACAAGAA
GATAAGAATGAATTGATTTTCATTCTTCTACATATGAACCACCAGTTGAG
CCAGCACCATTTGTTAAAAATACTGTCATTTTTCCACTGGATTGTTTTAG
GACCTTTGTCAAAGATCAAGTGACCAAAGGTTTGTGGGTTCAATTCTGCG
TCTTCCATTCTATTCCATTGATGTACCTGTCTGTCACTGTACTAATACCA
TGCAGTTTTTGTTTTTTTTTTTGNNGGGTTTTTTTTTTAACACCACTGCT
CCTTTAAAACCCTGAAGGCCACAAATGGGGTTTCCCCCACCTTTCTTTTT
TTTTGGAAGAA

Query= MSMg01no463_f19.b1 MSMg01no463_f19.b1 CHROMAT_FILE:
MSMg01no463_f19.b1 PHD_FILE: MSMg01no463_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:44 2005
         (629 letters)



>mm_chr3_12869087_12870115
          Length = 1029

 Score = 1139 bits (589), Expect = 0.0
 Identities = 616/625 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaatattgtcaaattttatagccaaacaagttgaattttatagcaaggtata 64
           |||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattccacaataaagttaaattttatagccacacaagttgaattttatagcaaggtata 264

                                                                       
Query: 65  gagtgtaatccacctcctgctccaactgctagctccctcttgaactgtgctgagcagata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtgtaatccacctcctgctccaactgctagctccctcttgaactgtgctgagcagata 324

                                                                       
Query: 125 aagcaaagctgtgataaactccttctctcacactggaatagattcagagttcttagtgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcaaagctgtgataaactccttctctcacactggaatagattcagagttcttagtgta 384

                                                                       
Query: 185 aatgtgggtagtttacttttcttttccagatatcaagccctaactatcttgggcaaaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgtgggtagtttacttttcttttccagatatcaagccctaactatcttgggcaaaatc 444

                                                                       
Query: 245 tctgcttctaatattgtaacaggaaaacaaaccaacaaaccaacaaaaaacaaaggagtg 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 tctgcttctaatattgtaacaggaaaacaaaccaacaaacaaacaaaaaacaaaggagtg 504

                                                                       
Query: 305 taccttattgaaataaacataaaggatcagcgatagcctagaggttgattttcctttctg 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 taccttattgaaataaacataaaggatcagagatagcctagaggttgattttcctttctg 564

                                                                       
Query: 365 acatcagcggtataattcagatgaacaatactgtttatatatttgtaagtttggtataag 424
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 565 acatcagcggtataattcagatgaacaatactgtttacatatttgtaagtttggtatgag 624

                                                                       
Query: 425 ctagttacagttcatcaaactaaaatcatagaaatagctgcctataagccaaaggttgaa 484
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 ctagttacagttcatcaaactaaaatcataaaaatagctgcctataagccaaaggttgaa 684

                                                                       
Query: 485 ccccatattaatttggagataagtgctacaaaataagtttaatgatttttcttttatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccccatattaatttggagataagtgctacaaaataagtttaatgatttttcttttatttt 744

                                                                       
Query: 545 tgagattgtaacataattacataatttcctcattccccccatctcttgcaactatcctat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgagattgtaacataattacataatttcctcattccccccatctcttgcaactatcctat 804

                                    
Query: 605 ataccctcctttttctctttcaaat 629
           |||||||||||||||||||||||||
Sbjct: 805 ataccctcctttttctctttcaaat 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)