BAC Information

Click to search

BAC

Clone NameMSMg01-463O06
Chromosome3 (Build37)
Map Location 85,797,699 - 85,798,114
singlet/doubletsinglet
Overlap geneGm1019
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265
Downstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O06.T7 (MSMg01no463_o06.b1)MSMg01-463O06.TJ (MSMg01no463_o06.g1)
ACCAG548436AG548437
length836759
length of high quality
(start - end)
44 (124 - 167)414 (75 - 488)
definitionCHROMAT_FILE: MSMg01no463_o06.b1 PHD_FILE: MSMg01no463_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:28 2005CHROMAT_FILE: MSMg01no463_o06.g1 PHD_FILE: MSMg01no463_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTAAATTTGCGGCGCNTAACGACACACAGTTCAACACAACCGCAGGA
ATCCTGTCCTAACAAACAAAAAGAAAAAGATTGTTCAGCGGAGCCAAGGT
TTTTACCCAGCATCACATACCGAGTTCCCCATGAGCCACTGGCCTAATTG
CTTCCCTTGCTTGGGAGGAGAAAGGGAGCTGCTGGTGAGTGATTTGTGGC
GCTTAATGACTTTAGCAGCAGCTGACGGTCATCCCTAGACCTGCTACTTC
ATTACCGTTAACAGGTGCTAACGATTTATACCTATCTCTCACTCTACAGT
CATCACGTAGATTTTTTTTTTATGCACGATTGCATCCGACTATTCTTTTC
GCTTATTTCTGACCTTTGCCGCCGCTTTTATCCCCTTGCCTACTCACATC
TATGTCTTTGTACCCCCCTTCCTCATTTCTTTCCTTCCCTTCCCTTACTT
TCTCCCTATTCCGCCTCTCTCTTTCTTCTTCCCCTCTCTTCTCCTCTTCT
TCTTTCCTCCTCCCACTTTTTTTCTTTCTTCCTTCCCCTCTTCCCACTCT
CTTTCCTTTCAATATTTATTTACTTCTTAACTCGTTCTCTATTCTCTCTT
TCCTCTCATTTTCCACTTTCTATTTTTATCNACCTCCTTATTCCTCACCT
CATGTTTCTTCCATTTATTTTCTTTTAACAACCTTCTTTTTTTTTACACT
ACCACACACCCGGTTTTTCTTTTTCTTCACTCCTCCTTTTATTTCTCCTT
CCCTCTCTTTTTCTTTATTTCTCTCCCCTTCTCTCCCCTATCTCTCCTCT
TTCCTCCTTTTCTCTCCTCTGTTCTCTCCCTCCTCA
NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACGCGAAAATCCACAGCTGAGGGTCCAGGTCCAGTTC
TGAAGAGCTCTCTGTCACCCCTGACTGGCCCTCCTCCCCGTAGGGCTTCT
CAAAGCTAAGCTCAGACCTTTCTGTCTCCCTTAGGGCGATTCTGGAGGGC
CTCTGTCCTGTCACATTGATGGTGTCTGGAGGCTGATGGGTGTGGTAAGC
TGGGGTTTGGAATGCGGTAAGGATCTTCCGGGAGTCTACACCAACGTGAC
CTACTACCAAAAGTGTATTTTTGTCATTATCTCGAGAGCTCCTCCGGGCT
GGGGTGGTGACAGCACCCACATGACTTCCTGTTCCCTACTATGTTACTTT
CTCTGGCTCTCCTGGGATCCTCCCGAGCCTTTGGCCCTAGCGTAATACCA
AGTCAATCCAGGAGCTGCTGCTGTTGGGGAACTCACGGGATGGGGTGCGT
GGAGAATAAAGCCTTATCGGAGAACTCATGAGACAGTCGCTGCGATGTCT
GGATGACTGCCTTTATGTATGTGCTTGCCAGGTTCCTGTTTTGCGTATGT
TTTCGTAACTTGGAATGCATTTTCTCTATAATTTACGTCTTTCATCTCCT
GTTCATTATTTTGGGTCTGTTCATCGTTTTTTGCTCTTTTTATCTTTACT
TTTCTTGTCTTTTTCCATTTTCAACTTTCCTTCACTCCCTTTTTTTTCTA
ACTTTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o06.g1 MSMg01no463_o06.g1 CHROMAT_FILE:
MSMg01no463_o06.g1 PHD_FILE: MSMg01no463_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:28 2005
         (414 letters)



>mm_chr3_85797499_85798314
          Length = 816

 Score =  748 bits (387), Expect = 0.0
 Identities = 409/417 (98%), Gaps = 4/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagctgagggtccaggtccagttctgaagagctctctgtcacccctgactggccctc- 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 616 cacagctgagggtccaggtccagttctgaagagctctctgtcacccctgactggccctcc 557

                                                                       
Query: 60  -ctccccgtagggcttctcaaagctaagctcagacctttctgtctcccttagggcgattc 118
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctccccgtagggcttctcaaagctaagctcagacctttctgtctcccttagggcgattc 497

                                                                       
Query: 119 tggagggcctctgtcctgtcacattgatggtgtctggaggctgatgggtgtggtaagctg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tggagggcctctgtcctgtcacattgatggtgtctggaggctgatgggtgtggtaagctg 437

                                                                       
Query: 179 gggtttggaatgcggtaaggatcttccgggagtctacaccaacgtgacctactaccaaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gggtttggaatgcggtaaggatcttccgggagtctacaccaacgtgacctactaccaaaa 377

                                                                       
Query: 239 gtgtatttttg-tcattatctcgagagctcctccgggctggggtggtgacagcacccaca 297
           ||| ||   || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtggatcagtgct-attatctcgagagctcctccgggctggggtggtgacagcacccaca 318

                                                                       
Query: 298 tgacttcctgttccctactatgttactttctctggctctcctgggatcctcccgagcctt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgacttcctgttccctactatgttactttctctggctctcctgggatcctcccgagcctt 258

                                                                    
Query: 358 tggccctagcgtaataccaagtcaatccaggagctgctgctgttggggaactcacgg 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tggccctagcgtaataccaagtcaatccaggagctgctgctgttggggaactcacgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 816
Length adjustment: 9
Effective length of query: 405
Effective length of database: 807
Effective search space:   326835
Effective search space used:   326835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)