BAC Information

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BAC

Clone NameMSMg01-464A04
Chromosome3 (Build37)
Map Location 89,029,064 - 89,029,589
singlet/doubletsinglet
Overlap geneThbs3
Upstream geneRhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1
Downstream geneMuc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464A04.T7 (MSMg01no464_a04.b1)MSMg01-464A04.TJ (MSMg01no464_a04.g1)
ACCAG548528AG548529
length723724
length of high quality
(start - end)		530 (54 - 583)32 (70 - 101)
definitionCHROMAT_FILE: MSMg01no464_a04.b1 PHD_FILE: MSMg01no464_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:38 2005CHROMAT_FILE: MSMg01no464_a04.g1 PHD_FILE: MSMg01no464_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGGGGGAGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTCCTCTTCCCTCTGACTTCCTTTCTCGCCAGCTCG
TCCCGTCTTTTGTCTCCCTTCACCCTGGTCCTGTGATTGACGCACTATCT
TTGTCAATGACTCCCAGGCAGTGACATCCATATCTGGCCCAGGTGAGCAC
CTCCGGAATGCTCTGTGGCATACCGGCCACACCCCTGATCAGGTACGACT
GCTGTGGACTGACCCACGGAATGTGGGTTGGCGAGACAAGACATCCTATA
GATGGCGGCTGCTCCACCGGCCCCAAGTTGGCTACATTCGGTAAGGGAAA
AGGCTTGAGCCCTGGAGAGGGGGCAGGGGCAAAACTCAGCCTCCTGTCCC
CTCTAGCTAGCAGGGACTTGGGGACTGTGGCCTTCGCTCTGCTCACTTCT
TTACTGTCTCTGGTAGGGCTTGCAGCCAGTTCCTTCCAGTTTCCCTTCCC
AACACAGAGGAGGTGGTATCAGGAACACCTTTCCTTTGCATCCAATTTCC
CCTCTAGATCCAGGGTGTTGAGCTAGATGCCCTTCAGTGCTCTGGGAGCC
TCTAGACCAGGGCAGTCTGTGGAAGAACCTGTCCCTTCCAGTCCCTAAGT
GTCCAGAATCTGCTCCTGCATTATCGGACTTTGGAAAGGGACCATGATGT
ATAAAAAAACCCATTGAGACCTA

TACAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTCTGCGGAATCCAGTCCTGAAGGCAGTGGTGGCGCACGCCTTTAAT
CCTGGTACTTGGGAGGCAGAGTAGGTGGAATTTCTGAATTCAGAACAGCC
TGGTCTACAGAGTGAGTTGCAGGACAGGCAGGGCTATATCAAGAAAACCT
GGCTCGAAAAACCCAAACTCCCGCGCGGGGGGGGGAGCATAGGGTGTGAA
GGCAAACAGGTGCAAAATGGTGAGGCCGGCAGGGGCGGGAAACATAAAAA
CCCTTTGTCCACAAAAAAANTTAAAAAAAAAAAAAAAATTTCCCCCCCCC
TTGGNCTTTTAAAACCTTTACTAAAAAAAATAATTGGGGGGTTAAAAAAA
AAAGCTCCCCCCCGGGGAAATTTCCTCTGCCAAAAATTTCTTATACTAAA
AAAAACCCNTAAAAAAATCCCCCCCCCCCAAAAAAAGGGAAAATAATTCC
CTCCTCCCCAAAAAAAACCCTTTTTTTCTCCTTTTTTTTTTTTTTNNTTT
TNCCTCTCCTCTCACTTTCTCTTTTNNCTTTTTTTTTTTTTTNCNTTTCT
TTTCTCTTCCTCTTTCNTTTCTCTCCCCCTTTTTTTCTTCTCCTACCTTT
CTCTACCCTCTCCCCCCTCCCTTCTTCTTCCTCTTTTTCCCCTCTCTACT
TTTGGGCACAAGCGGCGGGGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_a04.b1 MSMg01no464_a04.b1 CHROMAT_FILE:
MSMg01no464_a04.b1 PHD_FILE: MSMg01no464_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:38 2005
         (530 letters)



>mm_chr3_89028860_89029789
          Length = 930

 Score =  994 bits (514), Expect = 0.0
 Identities = 523/526 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcctcttccctctgacttcctttctcgccagctcgtcccgtcttttgtctcc 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattccttcctcttccctctgacttcctttctcgccagctcgtcctgtcttttgtctcc 264

                                                                       
Query: 65  cttcaccctggtcctgtgattgacgcactatctttgtcaatgactcccaggcagtgacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcaccctggtcctgtgattgacgcactatctttgtcaatgactcccaggcagtgacat 324

                                                                       
Query: 125 ccatatctggcccaggtgagcacctccggaatgctctgtggcataccggccacacccctg 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ccatatctggcccaggtgagcacctccggaatgctctgtggcatactggccacacccctg 384

                                                                       
Query: 185 atcaggtacgactgctgtggactgacccacggaatgtgggttggcgagacaagacatcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcaggtacgactgctgtggactgacccacggaatgtgggttggcgagacaagacatcct 444

                                                                       
Query: 245 atagatggcggctgctccaccggccccaagttggctacattcggtaagggaaaaggcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagatggcggctgctccaccggccccaagttggctacattcggtaagggaaaaggcttg 504

                                                                       
Query: 305 agccctggagagggggcaggggcaaaactcagcctcctgtcccctctagctagcagggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agccctggagagggggcaggggcaaaactcagcctcctgtcccctctagctagcagggac 564

                                                                       
Query: 365 ttggggactgtggccttcgctctgctcacttctttactgtctctggtagggcttgcagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttggggactgtggccttcgctctgctcacttctttactgtctctggtagggcttgcagcc 624

                                                                       
Query: 425 agttccttccagtttcccttcccaacacagaggaggtggtatcaggaacacctttccttt 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 agttccttccagtttcccttcccaacacggaggaggtggtatcaggaacacctttccttt 684

                                                         
Query: 485 gcatccaatttcccctctagatccagggtgttgagctagatgccct 530
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcatccaatttcccctctagatccagggtgttgagctagatgccct 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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