BAC Information

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BAC

Clone NameMSMg01-464D01
Chromosome3 (Build37)3 (Build37)
Map Location 95,962,690 - 95,962,93596,188,490 - 96,188,825
singlet/doubletsingletsinglet
Overlap geneOtud7b
Upstream geneSema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908
Downstream geneMtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464D01.T7 (MSMg01no464_d01.b1)MSMg01-464D01.TJ (MSMg01no464_d01.g1)
ACCAG548664AG548665
length792793
length of high quality
(start - end)
246 (77 - 322)336 (83 - 418)
definitionCHROMAT_FILE: MSMg01no464_d01.b1 PHD_FILE: MSMg01no464_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:52 2005CHROMAT_FILE: MSMg01no464_d01.g1 PHD_FILE: MSMg01no464_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:52 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(95,962,690 - 95,962,935)(96,188,490 - 96,188,825)
sequence
CTAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCC
GCGGAATTCCATTTCCTACTGACTGCTGTGTTTGGACTTGATCTGTTATT
AGATTGTATAAACTGAGGACAAATGAAGAGAATCAGAAAACTTGTATCAT
GTTGTTTTTATTTATATAGTACCCAATCTTAGTTCTGCTTGCCTTTCTGA
AGAGAAAATAAAAAAGTTCCAGGGAAAGGGAAGAGAGGTCTAAGGTCATA
TGGGAAATGGGTATTGGGTCTTTTAACTTTTTGTTAAATTAGTTTTAATT
TGGAGGGCGACTATTAAGGCATTTTTTTTAAAGATGAGGGACTCTGAGAC
ATTATTATTTTTTTAATGAGGGCTTGTGAGATTTTCATTCTGTGTTTTTT
AGGGTGGAGGAGGGGTTGAGTATCCCCCTTTTTTCTTTCCTCATACTTCT
TTGTTGCCTCTGCCTTTTTTTTCCTCCCCTTTTGCTTTTCACTCCCCCAT
TACCTCATCTTCTCTTTCCCTTTTTTCTTTCCCCCTTTCTCCCCTCCCTC
CTTTTTACTTCCTTTCTACCACTTTCCCTTTTATCTACTCTTATTCCCCC
CGCCTTTTCCCCTCTCTTTTTCTTTCTTCTCCCTCCCCCTTCTTTTCCTT
CTCTCGTGGCAATTTATTCTTATCTATTTTCTTTCCCACCCTTTTTCCCT
TCCTTTCATCCTCCCCCCTTCACATTCTATTTCGCCATATACTCCTTCTT
TTTTCGTTTCTCCCGCCTTTTTCTTCATACCCTCTTTCTTTT
NNNTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTGCACCTTGTTTC
TTCCATGGCTCAAGGGACCCAGAAGGGCAGCGAAATTCACCTAGAAAGGA
GACAGCAGGAGACTGGAGAGAGATATGGCTTGGCTGTTAAGAATGTTGCC
AGAGATGGAGGCAATGGCTAAGCAATAACCAACCCAACTTGAGACCCATC
CCATGGGCATGCACCAATCTCTGACACTACTAATGATACTCTGTTATATT
CGCAGTCAGCCTAGCATAACTGTCCTCTGATAGGTTCCACACAGCAGCGG
ACTGAAACAGATGCATAGACCCAGAGCCAGACATTGGGTGGAGCTGGGGG
AGTCTTATGGAAGAGATGGTGGGAGCCCCCCTTTTCTAGCGTCTTCTGAT
CCTCCTCCACTTTCTCTCTCTATCTCTCTTCCTCCCTCTCTCTCTTTTCC
GCCGCTTTGTTTTACTTCCTTTCGTCCCCTCCCACTCCCTTCCACTTGTT
TTCCCCCCTTTTTTTTATTTTGCTCTTCGCTTCCTCCCATTCCTTCACGT
TCCTGCTCCTTCTCTTGTCTCTCTCCCTCCTTTCTCCTACTATTTTCCAC
GCCTTCCTCCCGTCTCCTACCCCTCCTCTTTTCATCCCCGCACCTGTTTT
TTTTTTTTTTCCCCGCCTCCCGCCCTCTCCTCTGCCTCCTTCTTCCCTCT
TCCAGCCCTCTTCTTTCCGCTCGTTCCCCCACATCTCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_d01.b1 MSMg01no464_d01.b1 CHROMAT_FILE:
MSMg01no464_d01.b1 PHD_FILE: MSMg01no464_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:52 2005
         (246 letters)



>mm_chr3_95962490_95963135
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtttggacttgatctgttattagattgtataaactgaggacaaatgaagagaatcag 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtttggacttggtctgttattagattgtataaactgaggacaaatgaagagaatcag 260

                                                                       
Query: 61  aaaacttgtatcatgttgtttttatttatatagtacccaatcttagttctgcttgccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacttgtatcatgttgtttttatttatatagtacccaatcttagttctgcttgccttt 320

                                                                       
Query: 121 ctgaagagaaaataaaaaagttccagggaaagggaagagaggtctaaggtcatatgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaagagaaaataaaaaagttccagggaaagggaagagaggtctaaggtcatatgggaa 380

                                                                       
Query: 181 atgggtattgggtcttttaactttttgttaaattagttttaatttggagggcgactatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atgggtattgggtcttttaactttttgttaaattagttttaatttggagggtgactatta 440

                 
Query: 241 aggcat 246
           ||||||
Sbjct: 441 aggcat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_d01.g1 MSMg01no464_d01.g1 CHROMAT_FILE:
MSMg01no464_d01.g1 PHD_FILE: MSMg01no464_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:52 2005
         (336 letters)



>mm_chr3_96188290_96189025
          Length = 736

 Score =  611 bits (316), Expect = e-179
 Identities = 331/336 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcattgcaccttgtttcttccatggctcaagggacccagaagggcagcgaaattcacct 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattgcaccttgtttcttccatgtctcaagggacccagaagggcagcgaaattcacct 260

                                                                       
Query: 61  agaaaggagacagcaggagactggagagagatatggcttggctgttaagaatgttgccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggagacagcaggagactggagagagatatggcttggctgttaagaatgttgccag 320

                                                                       
Query: 121 agatggaggcaatggctaagcaataaccaacccaacttgagacccatcccatgggcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatggaggcaatggctaagcaataaccaacccaacttgagacccatcccatgggcatgc 380

                                                                       
Query: 181 accaatctctgacactactaatgatactctgttatattcgcagtcagcctagcataactg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaatctcagacactactaatgatactctgttatattcgcagtcagcctagcataactg 440

                                                                       
Query: 241 tcctctgataggttccacacagcagcggactgaaacagatgcatagacccagagccagac 300
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tcctctgagaggttccacacagcagcggactgaaacagatgcagagacccagagccagac 500

                                               
Query: 301 attgggtggagctgggggagtcttatggaagagatg 336
           |||||||||||||||||||||||| |||||||||||
Sbjct: 501 attgggtggagctgggggagtcttgtggaagagatg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)