BAC Information

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BAC

Clone NameMSMg01-464E14
Chromosome3 (Build37)
Map Location 117,338,445 - 117,538,970
singlet/doubletdoublet
Overlap gene4833424O15Rik, EG668759, Snx7
Upstream geneHiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneLOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464E14.T7 (MSMg01no464_e14.b1)MSMg01-464E14.TJ (MSMg01no464_e14.g1)
ACCAG548738AG548739
length743764
length of high quality
(start - end)
163 (84 - 246)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no464_e14.b1 PHD_FILE: MSMg01no464_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:00 2005CHROMAT_FILE: MSMg01no464_e14.g1 PHD_FILE: MSMg01no464_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,538,814 - 117,538,970)(117,338,445 - 117,338,687)
sequence
NACTCATAATTGCGGCGNTAAACGAACACTATTTCCTACTCAGCGNGGAA
NCCAANATTGTCAAAAACATTTGACNGGNGGNNGGGAGAGGGATGTGTTA
AGTCATGAAGACTTACATCTTGAAAAAAATGGTGGTCTTTCCTGTTCTCT
ATCTGCCTTTAAAAACAATCATGCTAATCCTTAGTCTTTAATGATTCTAC
TCCAATTGCTTATTGATATTTATTTTCTAATTTCAAAATTTTATTTATTT
GGGAGAGCCAGCAAACATGTTTTAAATATTTGTTGATATTGAGGAGGCGC
CACTTATAATCAGATGNTTTTCTGCTGGCGCCTCATTTGTAAATCTGTAA
CTTGTTTATACTCATCACTGAACTGGACATTTTATTTTATTTCTAGTGCA
TACTATGTACTTACCAGCCATATGATAGAAAAAGAGATCGACTTCATGAA
GGCGCCCTCTGACCTCCATGTACAAACTGTGGTCTATGTGCTATGCTTCT
CCCCAAATCTATACAGAAATGCATGCATAATGTACAAAAGGTAGATTGTA
AGTATTACAGGTTTCAGTGGTTATAGTTACTGCTGTGAATCCATGACACA
TATTATTGTATTTTCCTGTAATCGTTGTTCCTCCTGCTTTTTTTTTTTTC
TTTCGTTCACTTCATCTCTTACCTCCATCACCCTTGCTTCCATATCTTCT
TTTGTTCCCCCTTTTTTATTTCTTTAACCCACTCTATTTTTTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTACCGCAAAATTCTTCTCTGGGCAGAAATTTCTGCCATTTG
CTAAGTGTAGTAATGGTTTCATTTGTGTCCTTTTGCTTTCACATCCACTC
AGCCTGCCATGATTCCATTGCCTTCACAATCTTCCAGAATTCCATGCCAC
TCTGTGCTCTGGTTGGGGCTGTGCACTGCAATTGATTGAGAGTAATTTTG
CCAGGCTGAGCCAGGCAAAAAGAATGTAAAAGGACAGGATGAAAAACTAA
TCTCAGCAAATGATTAGGTAGTCACTGAGACCAGCGAGAGGCCAGCAAGA
ATCAACCCATATGAAAGGTGAGATGAACAGTGCTGGAACTGTACAGCCCG
GGTACCACTGCTACCAATAAGGCAATGTTTCTACCTAGCCTGGGTACCAC
TGCTACACACAAGTCAGCGCTTCTACTTAGCCCAGGTATCATTGCTATAC
ATAAGTCAGTGTTTCGACCTCTCCTAGTGCCTTCAGGCTGGCCAAAGAAG
CATATGCTTTCTCTGTATCTGCCCCGTGTCAGCCACAGGAACAACTGACT
TTGAATGATGCGCTTGTGAAACCATCTGGTCGGGCCCCCTTGGATTACTT
ATTTTTATTGATTTTTGTTCTCGCCGGTAAATCATTCCTTCCTCCCCAAA
CAACTTTTATGCCCTTAATTTAAATTTTTCTCACCCTCTTTCAGACTATT
TTTTTATATTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_e14.b1 MSMg01no464_e14.b1 CHROMAT_FILE:
MSMg01no464_e14.b1 PHD_FILE: MSMg01no464_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:00 2005
         (163 letters)



>mm_chr3_117538614_117539176
          Length = 563

 Score =  304 bits (157), Expect = 2e-87
 Identities = 157/157 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggagagggatgtgttaagtcatgaagacttacatcttgaaaaaaatggtggtctttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gggagagggatgtgttaagtcatgaagacttacatcttgaaaaaaatggtggtctttcct 298

                                                                       
Query: 61  gttctctatctgcctttaaaaacaatcatgctaatccttagtctttaatgattctactcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gttctctatctgcctttaaaaacaatcatgctaatccttagtctttaatgattctactcc 238

                                                
Query: 121 aattgcttattgatatttattttctaatttcaaaatt 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aattgcttattgatatttattttctaatttcaaaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_e14.g1 MSMg01no464_e14.g1 CHROMAT_FILE:
MSMg01no464_e14.g1 PHD_FILE: MSMg01no464_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:00 2005
         (245 letters)



>mm_chr3_117338245_117338889
          Length = 645

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctctgggcagaaatttctgccatttgctaagtgtagtaatggtttcatttgtgtcc 60
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 201 tcttctctgggcagaaatttctgccatttgctaagcgtagtaatggtttcatttgtgtgc 260

                                                                       
Query: 61  ttttgctttcacatccactcagcctgccatgattccattgccttcacaatcttccagaat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ttttgctttcacatccactcagcctgccatggttccattgccttcacaatcttccagaat 320

                                                                       
Query: 121 tccatgccactctgtgctctggttggggctgtgcactgcaattgattgagagtaattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatgccactctgtgctctggttggggctgtgcactgcaattgattgagagtaattttg 380

                                                                       
Query: 181 ccaggctgagccaggcaaaaagaatgtaaaaggacaggatgaaaaactaatctcagcaaa 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggctgagtcaggcaaaaagaatgtaaaaggacaggatgaaaaactaatctcagcaaa 440

              
Query: 241 tga 243
           |||
Sbjct: 441 tga 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)