BAC Information

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BAC

Clone NameMSMg01-464F11
Chromosome3 (Build37)
Map Location 156,954,086 - 156,954,584
singlet/doubletsinglet
Overlap geneNegr1
Upstream gene4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F11.T7 (MSMg01no464_f11.b1)MSMg01-464F11.TJ (MSMg01no464_f11.g1)
ACCAG548780AG548781
length752748
length of high quality
(start - end)
284 (322 - 605)498 (76 - 573)
definitionCHROMAT_FILE: MSMg01no464_f11.b1 PHD_FILE: MSMg01no464_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:04 2005CHROMAT_FILE: MSMg01no464_f11.g1 PHD_FILE: MSMg01no464_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTAAATTTGCGGCGCTAAACGAATCACATTTCAATAGGATCCGNNGG
AATCTCACCTGCCGAAAACAGAATGGAGAGAAGCACTTGAAAAAATGTTC
AACATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCCCACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGTTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AACTGGACATATCATTATTCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACTATATGTATTCACTGATAAGTGGATATTAGTCCTCTTACCT
AGGATACCCAAGATATAAGATATTATTTGCTACACCCCTGAAACTCACTA
AGAATGTAAAATGAATTGTGGATTCTATGCCCCTTCTTAAATCTGGGAAA
TA
ACGATGATAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCTGAAACAATTCATCACACTTAAAGTACCCTCATAAA
TGGATAGAAATGCTTCATAATGCGAAAGGGGCTCGGAGCTGATGGATTCT
TTCATAAAATGCAGACTTAAGTATCTTTGCAAAAGATCCATTAATTTCCC
CATGCCAAATTTGAGCATGACACCCCAGGTATGAGGACTTCTGGAATATT
ATATTTGTACACTGCCAGCCTTTGACTAAAGACTTGGCAGGAAACACTTG
TTTGTCTTCAAATCNNCTCAATAGTTTACATGGCTTTATCTGTTACCGAT
GATCCTCATTGTGTGATATGGTTTAATAGCTGGCTGGTTAGAAGCACAGA
TCAGTAACCATAGTTACAAGAACTGGACTGAACAGCCATGTGTTGCAAGG
CACACAGCCTCTGTGAGAAAGCATCTCCAAAGGAGGACCCTACTGACTAA
GAATCTTGCCCACAACTGAAAGACTATTGTTTGATGAAATGAATATTCAA
AGCTGGGGAAATAATTTGATTCAGAGCGCTTGACTGTCATATACAGAGCT
AAGGACCCATCCCCAGTACCACCGAAAAAGATAAAAATAATATATTATTA
TAGAGTGAACTCCCTAGTTTCCTACCTTTAATTTGACAGGAATTCATGGT
TTAATTTTAATCAGTGATCCCTGGTTTGGTCATTCGCTTTGGGGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f11.g1 MSMg01no464_f11.g1 CHROMAT_FILE:
MSMg01no464_f11.g1 PHD_FILE: MSMg01no464_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:04 2005
         (498 letters)



>mm_chr3_156953886_156954784
          Length = 899

 Score =  917 bits (474), Expect = 0.0
 Identities = 493/502 (98%), Gaps = 7/502 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacacttaaagtaccctcataaatggatagaaatgcttcataatgcgaaaggggctcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atcacacttaaagtaccctcataaatggatagaaatgcttcataatgggaaaggggctcg 260

                                                                       
Query: 61  gagctgatggattctttcataaaatgcagacttaagtatctttgcaaaagatccattaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgatggattctttcataaaatgcagacttaagtatctttgcaaaagatccattaat 320

                                                                       
Query: 121 ttccccatgccaaatttgagcatgacaccccaggtatgaggacttctggaatattatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccccatgccaaatttgagcatgacaccccaggtatgaggacttctggaatattatatt 380

                                                                       
Query: 181 tgtacactgccagcctttgactaaagacttggcaggaaacacttgtttgtcttcaaatcn 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tgtacactgccagcctttgactaaagacttggcaggaaacacttgtttgtcttcaaatc- 439

                                                                       
Query: 241 nct---caa-tagtttacatggctttatctgttaccgatgatcctcattgtgtgatatgg 296
             |   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 --tttccaaatagtttacatggctttatctgttaccgatgatcctcattgtgtgatatgg 497

                                                                       
Query: 297 tttaatagctggctggttagaagcacagatcagtaaccatagttacaagaactggactga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttaatagctggctggttagaagcacagatcagtaaccatagttacaagaactggactga 557

                                                                       
Query: 357 acagccatgtgttgcaaggcacacagcctctgtgagaaagcatctccaaaggaggaccct 416
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 558 acagccatgtgttgcaaggcacacagcctctgtgagaaagcatccccaaaggaggaccct 617

                                                                       
Query: 417 actgactaagaatcttgcccacaactgaaagactattgtttgatgaaatgaatattcaaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 actgactaagaatcttgcccacaactgaaagactattgtttgatgaaatgaatattcaaa 677

                                 
Query: 477 gctggggaaataatttgattca 498
           ||||||||||||||||||||||
Sbjct: 678 gctggggaaataatttgattca 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space:   433832
Effective search space used:   433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)