BAC Information

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BAC

Clone NameMSMg01-464F19
Chromosome3 (Build37)
Map Location 97,931,666 - 97,931,898
singlet/doubletsinglet
Overlap geneNotch2
Upstream geneAcp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975
Downstream geneAdam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F19.T7 (MSMg01no464_f19.b1)MSMg01-464F19.TJ (MSMg01no464_f19.g1)
ACCAG548795AG548796
length771786
length of high quality
(start - end)
234 (76 - 309)395 (72 - 466)
definitionCHROMAT_FILE: MSMg01no464_f19.b1 PHD_FILE: MSMg01no464_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:06 2005CHROMAT_FILE: MSMg01no464_f19.g1 PHD_FILE: MSMg01no464_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTAATACTCGTGTCGCTAAACGACTCACTAATTTCAGATATGCGCGGAA
TTCCAAGTAGTTTCAAACACAAATTCACTATAGGCATGTACTACCATGCC
CGAGTGGTTAATGCCTTTACATAATGGTATTGGTTAGAACAAGCTACAAT
TCTAGTGGTAGCTAATTATATATATCAAGTCTCAGATAGCACAATAGTGG
TTTTGTTGGGGTTTTTTGTTTGCTGTTTTGGCACTCAGACTTGCACATGT
TGTTGGGTTGCTGCCTTTCTTTCTCTGTGCTTTGGTGCTGCAGGCTCCAA
GGCAGCCACAGCATTTTTGTAATTCTGCACAGGGCTGTGCAGGGGCTTTC
ACTCAGTGTGTTGTTGACACACATCTCGCTCCCAGAGGTGTGTCAGATTC
ACTCATTACTGTTCTCCCCAGGTTCTGTGGAGGCTGAGAATCCAGCAAAG
TTCATGCGTTTGTACTGTATTATAGACTACCACATATATCTACCTGCCTC
CCGTCTCCCAGCGTAACATCTCCTAATCCATTGCCCTTTTTGCCTTTCCT
TACTTACCCCCTCATTTCCATCATTCTTTTATTTCTACGTATCCCCCCCC
TTTTTTCTCCCTTCCCTCTCTTTCCGCCTACCCCTTTTTTTCTTGCCCGC
CCTTTTTTTTTCTTGCTTTTTACTGCCCCCCTTTTTCCTTACTTATTTTT
TCGCCTTTTCCCTCGATCTGTCTTATTTTCTTATTATTCCTTCCCCCCGC
TTTTTTCATCCCCATCTTTCG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTAGGTTTCGTGTGGCACCAGTTACTG
ATGGTGCAGTTACTGATAATGATGCTATTGATATTAAGATGCCTCTGCCT
TCTCTCACTTCTGACCAGACTGTAGGCTATGACCCCATCATCTCTCCTGA
AGTCGCCGCCTCCTTTGGTGTTCAGCAGCTGCCGCTGGAGGAGATCTGGC
CTCTCTGTGACTTTATAACTGTCCATACCCCACTCCTGCCCTCTACCACA
GGTAGGCTCTCAGTGTTTTTTTTCTGCAGACATCATCAAGCAGGTGTAGG
GAGGGAGTTGCCTGGGGCCTGCTGAGCATCATGATACTTTGTCACAAGTC
CTTGCCTCAGATGGAGGAGGGGTGAGCTCGCTGGAAAAGCCAGGTGTCTA
AATAGACTGAGGTAGTACAACTGGCATCCCAGATAGAGGCTTCATGGGAC
CCTGCAGGGCATTTTGTTCTTGGACCTCCATTTCCTATACTTCTTGACTG
TAACCCACCTCCATTTCATATGTTGTTATCCCTGAGTCTCTTGTTAGAAT
GATTTGTGATCTCTGGTATCCTTGCCATATCTAAGACGGCCATTGTCGCA
TTTTTTCGTCTTCGGGAACCTGTTTTCCACCGCAAACCTCTTATTTATTT
TTTCCTATTCGTCTCCTTTTTTTTTTCTCCGATTTGTTCGATATTCACTC
TTTTTTTTCGCTTACTATCCATTACTATTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f19.b1 MSMg01no464_f19.b1 CHROMAT_FILE:
MSMg01no464_f19.b1 PHD_FILE: MSMg01no464_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:06 2005
         (234 letters)



>mm_chr3_97931466_97932098
          Length = 633

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%), Gaps = 1/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactataggcatgtactaccatgcccgagtggttaatgcctttacataatggtattggtt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cactataggcatgtactaccatgcccgagtggttaatgcctttaaataatggtattggtt 260

                                                                       
Query: 61  agaacaagctacaattctagtggtagctaattatatatatcaagtctcagatagcacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacaagctacaattctagtggtagctaattatatatatcaagtctcagatagcacaat 320

                                                                       
Query: 121 agtggttttgttggggttttttgtttgctgttttggcactcagacttgcacatgttgttg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 321 agtggttttgttggggttttttgtttgctgttttggcactcagacttgcacaggt-gttg 379

                                                                 
Query: 181 ggttgctgcctttctttctctgtgctttggtgctgcaggctccaaggcagccac 234
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 ggttgctgcctttctttctctgtgctttggggctgcaggctccaaggcagccac 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)