BAC Information

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BAC

Clone NameMSMg01-464K12
Chromosome3 (Build37)
Map Location 114,032,107 - 114,032,614
singlet/doubletsinglet
Overlap genenone
Upstream geneAmy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464K12.T7 (MSMg01no464_k12.b1)MSMg01-464K12.TJ (MSMg01no464_k12.g1)
ACCAG549019AG549020
length746740
length of high quality
(start - end)
---510 (75 - 584)
definitionCHROMAT_FILE: MSMg01no464_k12.b1 PHD_FILE: MSMg01no464_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:30 2005CHROMAT_FILE: MSMg01no464_k12.g1 PHD_FILE: MSMg01no464_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCAATAAATTGCGCGCGCTAAAAGAANCACAATACATACATGATGCGN
GGAANNCGCAATTTCCTAAACGAGATGNANAGNAATCATGATATTGTCAT
TTTGATTTAAAAATGATAGGAAACAGTCGTAATATCATTTGAATGAGCAC
AATTGTATCTTGCAAGTTTATATGAAGTTATGATTTTCCATTTTGCTGGT
ATCAGTTCTTTGACCAGTATTCTCTGAACTCTTACTATTAAAACGCAATA
TCTGACTAAAGGAAAATATTTCTTCTCACAGTGAGATAATGCTTTAACCT
CAATGCCTGCATGTTTTTTTTCTCTATTTCACACCACTTTTCCTCCTAAC
TCCCAACATTTTGGCATTGATAACAACATTTGACCTCTTATTTATCATAA
ATCTCGATGATAGTCACACGATAGATCTAAGAAACTATTAAGCTTTTTTC
TCATCCATAAGCTAGTGAACCTTTAACAGCCATTAGCATCTCATGAATAC
CATAACAACTTTGTCTGCTAAATCTATGCATTTTAACGTCTTTAGTTATA
CATTTTAATGCCTTAAAACGTATTTTTTCTGACTACATTTTTCATCCCCT
GTGATTAATGATGATACTTGCCCCATAACCCCTCCCTATTCTCTTTTCGT
TTCATCATTTTTTCTATCCTTATACTACCACATTTCTATAAACTTCCTAC
CTTCCTTTCACCTTTTCTTTCATCAATTTCCCCTCTCCACTTTCCC
CCCGATGATACNGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGACACGAAAGAATCTATTATTGTAACAATATTGGCAGC
TTACTTCAGACTCCCTGATCTCTATGAATTTCTATTTTCTTTCACAGCTG
TTTAGTTAAGTCTTACATGAAAACCTTTTTTTTTAATTTATGGAAGGGAT
ATCACTTTGTAGTTCTGTATCATGTCACAAGACTTTCACATAATATATAT
ATATAGACATGAAAACAAAAAGAAAGGACTCAAATGAACAAGTTGCTACC
ATCAGGTAAAATTCTATTATTTTACATATTTACAAACTAAGAAGAAATAA
ATAAATCTTAATGGATTGCTTGTCACTGGTTAATAAAGGTTTGTTGTAAC
CATGTAACATTTGAGAATTAAGGTAGATATTGACAAATTCCAGATTAAGG
AACAAATTGGTTTTGATAAAGTTTAAATTGTCTATAACTCTTGTATAAAA
TCTTAGAGGGGAAAAAGACTAAGAAATGATGAGTGGGCTATTATGCACAT
AGAGGAATGTCAAGCTTTGAGATTTGAAAAAGGAGATGGGTATAGTTGCA
CAAACAGTATTCCTAGGAATCATCAGGCTGACACGAATGGATCAGTATCT
ATACTTTGAATACTGTCTTGGCTTTGCCTTAGTAAAACCTTATACCAACT
AGACTGAAAAAATAATTTCAAGTAATCAAGTACATTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_k12.g1 MSMg01no464_k12.g1 CHROMAT_FILE:
MSMg01no464_k12.g1 PHD_FILE: MSMg01no464_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:30 2005
         (510 letters)



>mm_chr3_114031907_114032814
          Length = 908

 Score =  934 bits (483), Expect = 0.0
 Identities = 503/513 (98%), Gaps = 8/513 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctattattgtaacaatattggcagcttacttcagactccctgatctctatgaatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tctattattgtaacaatattggcagcttacttcagactccctgatctctatgaatttcta 649

                                                                       
Query: 61  ttttctttcacagctgtttagttaagtcttacatgaaaacctttttttttaatttatgga 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 648 ttttctttcacagctgtttagttaagtcttacatgaaaacc-ttttttttaatttatgga 590

                                                                       
Query: 121 agggatatcactttgtagttctgtatcatgtcacaagactttcacataatatatatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agggatatcactttgtagttctgtatcatgtcacaagactttcacataatatatatatat 530

                                                                       
Query: 181 agacatgaaaacaaaaagaaaggactcaaatgaacaagttgctaccatcaggtaaaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agacatgaaaacaaaaagaaaggactcaaatgaacaagttgctaccatcaggtaaaattc 470

                                                                       
Query: 241 tatt---attttacatatttacaaactaagaagaaataaataaatcttaatggattgctt 297
           ||||   |    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tattacaa----acatatttacaaactaagaagaaataaataaatcttaatggattgctt 414

                                                                       
Query: 298 gtcactggttaataaaggtttgttgtaaccatgtaacatttgagaattaaggtagatatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtcactggttaataaaggtttgttgtaaccatgtaacatttgagaattaaggtagatatt 354

                                                                       
Query: 358 gacaaattccagattaaggaacaaattggttttgataaagtttaaattgtctataactct 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gacaaattccagattaaggaacaaattggttttgataaagtttaaattgtctataactct 294

                                                                       
Query: 418 tgtataaaatcttagaggggaaaaagactaagaaatgatgagtgggctattatgcacata 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293 tgtataaaatcttagaggggaaaaagactaagaaatgatgagtgggctattatgcacaaa 234

                                            
Query: 478 gaggaatgtcaagctttgagatttgaaaaagga 510
           ||||||||||||| |||||||||||||||||||
Sbjct: 233 gaggaatgtcaagttttgagatttgaaaaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 908
Length adjustment: 10
Effective length of query: 500
Effective length of database: 898
Effective search space:   449000
Effective search space used:   449000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)