BAC Information

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BAC

Clone NameMSMg01-464K17
Chromosome3 (Build37)
Map Location 97,541,117 - 97,541,527
singlet/doubletsinglet
Overlap genePde4dip
Upstream geneZfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2
Downstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464K17.T7 (MSMg01no464_k17.b1)MSMg01-464K17.TJ (MSMg01no464_k17.g1)
ACCAG549029AG549030
length802759
length of high quality
(start - end)
44 (172 - 215)410 (70 - 479)
definitionCHROMAT_FILE: MSMg01no464_k17.b1 PHD_FILE: MSMg01no464_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:31 2005CHROMAT_FILE: MSMg01no464_k17.g1 PHD_FILE: MSMg01no464_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATTTGCCGGCGCCAACACGAACCACAATTGCAAAACAGAGGGNGCGG
NAATCCTTGGTTACCTCAAAGCCACACGGGTAATGGGGCTATTTAATTTT
CTGGAGTCCACCTTCTTGAGTTCCTTGCATATATTGGATATTATTCCCTT
ATCATATTTATGATTGGTAAAAATCCTTTCCCAATCTATTGGTGACCTTT
TTGTCTTATTGACAGTGCCTTTTGCCTTACAGAAGCTTTGCAATTTTATG
AGGCCCCATTTGTTGATTCTCGATCTTACCGTACAAGCCATTGCTGTTGT
TTTCAGGAATTTTTCTTTTGTTTCTCCACTTTCTCTTCCATAAGCCTTAG
TGCTCCTGGCTTTATGTTTACTTTCTTGACCCACTTATATCTGTTTCCTG
TTTCCGGCCAATATATCGTATTTGTTCTTATTTTTCCACATTGATACTGC
CTGTTTCACCCTTACCTTTCGTTGATTATACTGACTTACTCACATCGGAT
GTCTTTTACCCTCTCTGTTTTCCATGTATGTGCTTTCCCTTTTTTATCAT
TCCATTCCATTTCTATTCGACTTCCCGTTTTGTTATTGTCATCCTCTTCC
TTTTTTTTTTCTACCTATTTTGCTCCCCGCCCCTTCCCCTCTTTGTCCTT
TCCCGTTATTTTCCCTCCTTTATTTTTTCGTTTCTTTCCCCCTTCCTTTT
TCCTCTGTTCCGTCCTTCCCCCTTTCTCTTCATTTCCCCATTTTCATTTG
ACCTTTTTTCCCTCCTCCCTTTTCCCCGAACTTCCCTATTCCATCCCTGT
CT
ATGTATTGTXXXXXXXXXXXXXXXXXXXXXTTCCAAAATTGGGGNNGAAC
TATAGAAGTTCCCGCGAAATTCTCTACCCTCATGATCTTTTTTAGGAGTC
ACAAAATCTTCACATTCAGAACTCCCCAAGCCCCTCAGCCATCTCTTCAA
CAAGGGTCTTAGCTGGATTTAGCAGGTTCACTGTCCGTGGCCTGCAGGAA
AGGGGTACAGACTTCCTAGGACGCTGGGAAAGCCATGTTGTAAGTTGAGC
ACTGACTCAGAACAGATGGAGTTAGTGCTCCTGTTTAGAGATGCAAGCGT
GCATTTCCTCATTCTCTTCTGTGGAAGCTCAGCATACTTTTCTTCTCCTT
TTGTTAGTCTAGACCTATTTATACTCTAGAGAAAAGCAAGCCTCTGGACA
TGGAAAGTCCATCTATGGCAATCCAGTAACAGAAACCAAAGATGCATGAG
TAGGTCGAACGTGGCAATGACTTCTCTAGGGTAAGAGTCTCAGATCTCAC
TACATTTTGGCTTACGGACGGAAGTCGCTCTAGCGCCATTTGCAACAATG
GTTTAATTAGAACGTTTCATTATAATTAGAATATGAACACCTGATCTGAA
TTCTCCCTGAGCACTGACATAAGGTAAGTCCATAGTTTTTTCTATACAAT
CACATACGCCAGTATGACTTTTTCTAACAATACTTACCATTGTAATTTAC
CTTCCACCCATTACAACAATTGGTATGCACAATTTAATAATATTTACTTA
TCCTAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_k17.g1 MSMg01no464_k17.g1 CHROMAT_FILE:
MSMg01no464_k17.g1 PHD_FILE: MSMg01no464_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:31 2005
         (410 letters)



>mm_chr3_97540917_97541727
          Length = 811

 Score =  748 bits (387), Expect = 0.0
 Identities = 405/411 (98%), Gaps = 1/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctaccctcatgatcttttttaggagtcacaaaatcttcacattcagaactccccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 611 ttctctaccctcatgatcttttttaggagtcacaaaatcttcacattgagaactccccaa 552

                                                                       
Query: 61  gcccctcagccatctcttcaacaagggtcttagctggatttagcaggttcactgtccgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcccctcagccatctcttcaacaagggtcttagctggatttagcaggttcactgtccgtg 492

                                                                       
Query: 121 gcctgcaggaaaggggtacagacttcctaggacgctgggaaagccatgttgtaagttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcctgcaggaaaggggtacagacttcctaggacgctgggaaagccatgttgtaagttgag 432

                                                                       
Query: 181 cactgactcagaacagatggagttagtgctcctgtttagagatgcaagcgtgcatttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cactgactcagaacagatggagttagtgctcctgtttagagatgcaagcgtgcatttcct 372

                                                                       
Query: 241 catt-ctcttctgtggaagctcagcatacttttcttctccttttgttagtctagacctat 299
           |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cattcctctgcagtggaagctcagcatacttttcttctccttttgttagtctagacctat 312

                                                                       
Query: 300 ttatactctagagaaaagcaagcctctggacatggaaagtccatctatggcaatccagta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttatactctagagaaaagcaagcctctggacatggaaagtccatctatggcaatccagta 252

                                                              
Query: 360 acagaaaccaaagatgcatgagtaggtcgaacgtggcaatgacttctctag 410
           |||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 251 acagaaaccaaagatgaatgagtaggtcgaacatggcaatgacttctctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space:   321602
Effective search space used:   321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)