GGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCTAGATATTCCAAGTTTACAGATTATAAACAATTATAAC
TTAGTCAAAATTATAGGTAAGATATGTGTCTAAAACCAGAAAATACCCCA
GGAGATTCTGAAATATTCTTATAAAAATATTTCCATATTAGTTGTTTTAT
TATAAATCACACAAACTATAAAAGGAAATACAAGACCACAGCACTGTGGG
TGGCACAGTTTCTGAGAATTAGGCAAAAAATTTCTTCTGAAAATTTACTA
TTCCTGAAATAGCACCTCTAAAGCTCTATTCCTCTATGGTGTCTCTTAAA
TAAATTTGTTCTGTAACGAAAATCAGACATAAAGTCAAAAAGGGTCTCAG
ACTTTGCCAACGGTGAAGGAATATTTTAATCTCTACTCTGAGGCAGAGTT
TCCCACTTACAGGCAGTCTTTCTTTCCAAAGTTGTTTATTTCAAAACATT
TGCTTGAAAGATTAATAGCAACAAATCACTCATCTGGAACTGCCTAATAC
AGAATGTTTTATCACAGTTTAAACCAATAAAAATGTTTTTTTCAATAAAA
AATTTGTATATTCATGGATAATTGCAAGTTTTCAACAAGAGAGACAATAA
CACAAGACAGATAATTGTTACTTAATAAACATTAAGAAATAATCTTAACT
AAATATAGCTGAGTTTCGAGACTTTATTCTTTTGTTGCAATCACATTCTA
AAA

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAAACACATGAAACTCAAG
AAAAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAAGTGGGAG
CAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGTTGAGATAA
AAGGATGGACCATGTAGACACTACCATATCCGGGGATCCATCCCATAATC
AGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGATTATGCTGAAA
GGACCCTGATATAGTTGTCTCTTGTCTTAGTATGCCTGGGCCTAGCAAAC
ATAGAAGTGGATGCTCACAGTCGGCTATTGGATGGATCACATGGCCCCCA
ATGAAGGAGCTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCAACCCT
ATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTC
TAGCTGCATATGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG
AGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCA
GGGCCATAAAAGGGGAGTGGGTGGGGAATATGGGAAGAGTTCCCCTCCCT
CCCTCTTTTTTTTTCTTTTTCGGCCCCCCCTTTTTCCCTTTTTGTTTCCT
GGCTCTTTGTTCTCTTTCCTCCCCTTTCTCTCTTTTTCTCGTTTCCTTTT
CTTCTTTTAG

Query= MSMg01no464_n06.b1 MSMg01no464_n06.b1 CHROMAT_FILE:
MSMg01no464_n06.b1 PHD_FILE: MSMg01no464_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:43 2005
         (573 letters)



>mm_chr3_18764539_18765508
          Length = 970

 Score = 1025 bits (530), Expect = 0.0
 Identities = 560/570 (98%), Gaps = 5/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctaga-tattccaagtttacagattataaacaattataacttagtcaaaatt 63
           ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctcctagact-ttccaagtttacagattatatacaattataacttagtcaaaatt 263

                                                                       
Query: 64  ataggtaagatatgtgtctaaaaccagaaaataccccaggagattctgaaatattcttat 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 ataggtaagatatgtgtctaaaaccaaaaaataccccaggagattctgaaatattcttat 323

                                                                       
Query: 124 aaaaatatttccatattagttgttttattataaatcacacaaactataaaaggaaataca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaaatatttccatattagttgttttattataaatcacacaaactataaaaggaaataca 383

                                                                       
Query: 184 agaccacagcactgtgggtggcacagtttctgagaattaggcaaaaaatttcttctgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaccacagcactgtgggtggcacagtttctgagaattaggcaaaaaatttcttctgaaa 443

                                                                       
Query: 244 atttactattcctgaaatagcacctctaaagctctattcctctatggtgtctcttaaata 303
           |||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 444 atttac-attcctgaaatagcacctttaaagctccattcctctatggtgtctcttaaata 502

                                                                       
Query: 304 aatttgttctgtaacgaaaatcagacataaagtcaaaaagggtctcagactttgccaacg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatttgttctgtaacgaaaatcagacataaagtcaaaaagggtctcagactttgccaacg 562

                                                                       
Query: 364 gtgaaggaatattttaatctctactctgaggcagagtttcccacttacaggcagtctttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgaaggaatattttaatctctactctgaggcagagtttcccacttacaggcagtctttc 622

                                                                       
Query: 424 tttccaaagttgtttatttcaaaacatttgcttgaaagattaatagcaacaaatcactca 483
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 623 tttccaaagttgtttatttcaaaacatttgcttgaaagattaatagccacaaatcactca 682

                                                                       
Query: 484 tctggaactgcctaatacagaatgttttatcacagtttaaaccaataaaaatgttttttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 683 tctggaactgcctaatacagaatgttttatcacagtttaaaccaataaaaatgtttttt- 741

                                         
Query: 544 caataaaaaatttgtatattcatggataat 573
           ||||||||| ||||||||||||||||||||
Sbjct: 742 caataaaaa-tttgtatattcatggataat 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 970
Length adjustment: 10
Effective length of query: 563
Effective length of database: 960
Effective search space:   540480
Effective search space used:   540480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)