BAC Information

Click to search

BAC

Clone NameMSMg01-465D06
Chromosome3 (Build37)
Map Location 147,207,232 - 147,207,477
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465D06.T7 (MSMg01no465_d06.b1)MSMg01-465D06.TJ (MSMg01no465_d06.g1)
ACCAG549438AG549439
length732805
length of high quality
(start - end)
247 (64 - 310)---
definitionCHROMAT_FILE: MSMg01no465_d06.b1 PHD_FILE: MSMg01no465_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:13 2005CHROMAT_FILE: MSMg01no465_d06.g1 PHD_FILE: MSMg01no465_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCT
GCTGATTCCGATAGTTCTCTCCGTATGGTTTTAGGGATGACATGAAAAGG
TCAAATTGTCATTTTTCCATTTTTGGTTAAATCTTGCATTTCAATCAAGC
TCGCTGCATTTCCTTAAGCATTGGTGATTCGCTCCTTTTTTTTTTCCTTT
GAAACATTTACAGTATTCCACCCCCAATTGCATCTCCAAGGAAGGTTTTC
TGATAAGTACGGCTGTTCAATAAATTATTCTAAATATCCTTCCTGAGTTA
TGTGTGAAATTTATTAATAAAGTCTTGGGGACTGCTTGCATAAAAATCAG
TTTCAATCAGAAATTGCATTCACAAACAAATGCTTGATAAGAAATAAAAA
CTCATGATACAAAGAACAAAGGGCTATGTAAGCTTCTTTGAACAAAAATA
AATATTAAAATTTACTAAGTAAGTTGCTAATTAAAATTTCTATTTGAAAA
CAAATGCCTCTTTGTAGGATACTGAATCTTAATGCATGTTCATTATACGA
CATATTAAGGTTTAGGCATTTTCCTCCTAAAGAACAATATACATAACTTC
TAGTCCACCACAAAACCCAATACAGCACTTTAAAATTTTGGATATAGCAA
ATCCTACCAACACAGTACTCCATTTTGCCTATTCGACGAACCTCAAGATT
TCTCTATTCTTTGTGTCGCTTCAGGATTCTAA
AGACAAGTGAGGAAGGCCAGGGCGAGCCCGGNCCCCTTTTGGTCCCCCCC
CACCAAAAAAAAAGAAAACAAANGAAAAAAAACCCGCCGCCAGAAAACAA
CAGAAACGCATCAAAAACACAGAAAAAAAAAGACAAAGAGAGAAGAAAAA
AAAAAAAACGGGGGGGGAGAAAAAAAAAAAAAAAAAAAAAAAAACAAAGA
ACAAAAAAAACACCACCCCNCCNNCTCACTCAGTATATCGCCAACCAACG
AAAGGAGGGNAAAAAATNTTCCTTTTTCCCACAAAAAAAAAAAAAATTCT
CTTTTTTCCCCACAACACTAAAAGGCAAAAACCCAAAGTGTCAGGGAAAA
CAGGGGAAAAAGAAAAGCCAAAAAGGGCAAAGAAAATGAAAAATGCGNTT
TCTCCNCCCGGGCGTAATAGAAAGAAAGGGGGCAAAAAACGGGAAAAAAG
GTCGGGGGCGCACTTTTTCCCCCCCCCGGGGGGTCCCCGAAAAGGGAGAG
AAAAAAAAAATTTCAAAAAAAAAAAGAGGAGGGGAAAAAAAAAAAAGGGG
ATGGGGGGGACCACAAAAAAAAAGGGGAGGGAGAAAACCCCCTCTCCACA
AAAAAAGGAGGAGGGGNCGGCGGAAAAAAATNNCCAAGGGGGGGGGGGGG
GGGGGGGNGGTNCAAGAGACCCACGTCCCCGCCCGTACAGATAAGCCAAT
AGAACAGAAAAAAAAAAAAAAAAGAGAAAGAGAGAAGAGGGGGGGGCGAG
CACTTATATAATTAATAAAAAACAAAACACAACCGAAAGAACGAGAGGCA
AGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_d06.b1 MSMg01no465_d06.b1 CHROMAT_FILE:
MSMg01no465_d06.b1 PHD_FILE: MSMg01no465_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:13 2005
         (247 letters)



>mm_chr3_147207032_147207678
          Length = 647

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttctctccgtatggttttagggatgacatgaaaaggtcaaattgtcatttttccatttt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gttctctccatatggttttagggatgacatgaaaaggtcaaattgtcatttttccatttt 387

                                                                       
Query: 61  tggttaaatcttgcatttcaatcaagctcgctgcatttccttaagcattggtgattcgct 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 386 tggttaaatcttgcatttcaatcaagctcgctgcatttcctttagcattggtgattcgtt 327

                                                                       
Query: 121 ccttttttttttcctttgaaacatttacagtattccacccccaattgcatctccaaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccttttttttttcctttgaaacatttacagtattccacccccaattgcatctccaaggaa 267

                                                                       
Query: 181 ggttttctgataagtacggctgttcaataaattattctaaatatccttcctgagttatgt 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gggcttctgataagtacggctgttcaataaattattctaaatatccttcctgagttatgt 207

                 
Query: 241 gtgaaa 246
            |||||
Sbjct: 206 atgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)