BAC Information

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BAC

Clone NameMSMg01-465I08
Chromosome3 (Build37)
Map Location 73,444,823 - 73,445,267
singlet/doubletsinglet
Overlap geneBche
Upstream gene2010204N08Rik, Slitrk3
Downstream geneLOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465I08.T7 (MSMg01no465_i08.b1)MSMg01-465I08.TJ (MSMg01no465_i08.g1)
ACCAG549681AG549682
length752743
length of high quality
(start - end)
454 (66 - 519)459 (72 - 530)
definitionCHROMAT_FILE: MSMg01no465_i08.b1 PHD_FILE: MSMg01no465_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:39 2005CHROMAT_FILE: MSMg01no465_i08.g1 PHD_FILE: MSMg01no465_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGAAT
TCCAACTTTTCGAAGAAATTATGTAACATAGTTTGTTCTTTTTTCTTCTT
GACAGAGAAACAACTTATGGCTTGGACACTGTGATGTGAAAAAGCACTAC
AATAGGTCACGTCATGATTTTTGTTGTTGTTGTTTTGTGTTTTTATTTTT
TCGAGACAGGGTTTCTCTGTATAGCCCTGGTTGTTCTGGAACTCACTTTG
TAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCCTCTGCCTCTGCC
TCCCAAGTGCTGTTTATTATAGGTGTGTGGCACCACCGCCCGACTTTTTT
TTTTTTTTGGTATGATCATTTTTTGAAGCGGTTGCGGAACTTTACTCAGA
ATTTTTGGAAAGAGAATTTGTAAGGCTCCCTCTACTGATATGCTATAATG
GTCATTAAATGGAAGTATATGTATAAAAATTGATTGATTTCATTTGAGAT
ATAAAGAACTGTGAAAGGAGTATTTTATCCATTGTCTTCAGCTTGTCACT
TTCATTAACATATGTAATATACAGAAAACTATAAAAGCTAATACCTACCC
CAATTATTCCCCATAATTTTTTAAAAATTGATGTATTATCGACACGGATG
GAAATTATTGTTGTGTAAAACACCTGTGCCCCCACACTTCTCCACTAAAT
TTTTCCCCACCTAAAGAATTCTCTTCCATCCCTATAAATTTATTCTTCCC
CG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCGAGCTTCTGAGCTAATAACCATTTAAC
ATTGAGTGTATATCATGTGTGTTCTTTTGTGATTGGGATACCTCACTCTG
GATATGTTCCAGATCTATCCATTTGTCTACGAATTTTACAAATTCATTGT
TTTTAATAGCTATGTAGTACTCCACTGTATAAATGTACTACATTTTCTGT
ATCCACTCCTCTGTTGAGGTACACCTGGGTTCTTCCCGGCTTCTGGATAT
TATAAATAAGTCTATATTTATAGATGCTTGCTATAAATATAGTAGAGCAA
GCATCCTTATTACATATTGCACCATCTTCTGGGTATATGCCTAGGAGTGG
TATTGCTAGATCACATAAACAACCACCAAAACAAGACACTTATATGGATG
CCAATAAGAGCTTGCTGACAGGAACCTGATATAGCTATCTCCTGAAAGGC
TTTGCCAGTGCCTGACAAATACAGAAGTAGATCCTCACAATCAGAGGGAG
CACAGGGTTCTCATTGAAGAAGCTAGAGAAAGGATCCAAGGAACTGAAGG
TGTTTGCCGTTCCATATGAGGACCAACCATATGGACTAACCCCGAACTTT
TTGTGTTTAACTCTCCCACCAAGTAAAAAAAGGATGGGACTTCCTGGACC
TCTCTGTCTACGCACCAAAGGGCCGATCTATTTGACCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_i08.b1 MSMg01no465_i08.b1 CHROMAT_FILE:
MSMg01no465_i08.b1 PHD_FILE: MSMg01no465_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:39 2005
         (454 letters)



>mm_chr3_73444623_73445476
          Length = 854

 Score =  785 bits (406), Expect = 0.0
 Identities = 439/456 (96%), Gaps = 13/456 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattatgtaacatagtttgttcttttttcttcttgacagagaaacaacttatggcttgg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattatgtaaaatagtttgttcttttttcttcttgacagagaaacaacttatggcttgg 260

                                                                       
Query: 61  acactgtgatgtgaaaaagcactacaataggtcacgtcatgatttttgttgttgttgttt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acactgtgatgtgaaaaagcactacaataggtcatgtcatgatttttgttgttgttgttt 320

                                                                       
Query: 121 tgtgtttttattttttcgagacagggtttctctgtatagccctggttgttctggaactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtttttattttttcgagacagggtttctctgtatagccctggttgttctggaactca 380

                                                                       
Query: 181 ctttgtagaccaggctggcctcaaactcagaaatcctcctgcctctgcctctgcctccca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||      |||
Sbjct: 381 ctttgtagaccaggctggcctcaaactcagaaatcctcctgcctctgcctc------cca 434

                                                                       
Query: 241 agtgctgttt--attataggtgtgtggcaccaccgcccgacttttttttttttttggtat 298
           |||||||     |||| ||||||||||||||||||||| ||||||||||||||  |||||
Sbjct: 435 agtgctg---ggattaaaggtgtgtggcaccaccgcccaactttttttttttt--ggtat 489

                                                                       
Query: 299 gatcattttttgaagcggttgcggaactttactcagaatttttggaaagagaatttgtaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gatcattttttgaagcggttgcggaactttactcagaatttttggaaagagaatttgtaa 549

                                                                       
Query: 359 ggctccctctactgatatgctataatggtcattaaatggaagtatatgtataaaaattga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggctccctctactgatatgctataatggtcattaaatggaagtatatgtataaaaattga 609

                                               
Query: 419 ttgatttcatttgagatataaagaactgtgaaagga 454
           ||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttgatttcatttgagatataaagaactgtgaaagga 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)