Query= MSMg01no466_b06.b1 MSMg01no466_b06.b1 CHROMAT_FILE:
MSMg01no466_b06.b1 PHD_FILE: MSMg01no466_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:26 2005
(441 letters)
>mm_chr3_117592354_117593194
Length = 841
Score = 745 bits (385), Expect = 0.0
Identities = 432/473 (91%), Gaps = 40/473 (8%)
Strand = Plus / Minus
Query: 8 gaattccatgcttaccagagcaggttcagggacacctgttaagctacccaaagcgcagta 67
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 746 gaattccatgcttacaagagcaggttcagggacacc-gttaagctacccaaagcgcagta 688
Query: 68 ttgctaa---------------------------------------ttatttcaaccgat 88
||||||| ||||||||||||||
Sbjct: 687 ttgctaatgtcaaacaaaaacatcagtatttaatgaagcaaagaggttatttcaaccgat 628
Query: 89 tcttgtaaagatatgacaggaaatgagggttatagcaataatgggaagagataacttgat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcttgtaaagatatgacaggaaatgagggttatagcaataatgggaagagataacttgat 568
Query: 149 aggaagaacattcactatgaaagatctgcggtatgtgaatttaagctttaaaataattag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aggaagaacattcactatgaaagatctgcggtatgtgaatttaagctttaaaataattag 508
Query: 209 tattctacatgagaaacggtctgcaggcagatttgttaatctggggcttaaaaagaaatc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tattctacatgagaaacggtctgcaggcagatttgttaatctggggcttaaaaagaaatc 448
Query: 269 tcaaagttcagattagtatttgttggcttgtagaagtaactgaaacgctgagtaattggc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcaaagttcagattagtatttgttggcttgtagaagtaactgaaacgctgagtaattggc 388
Query: 329 atacttaggggagaatgtgtaaaaacagaagaggtttatgggagcagagggcatcgtgag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atacttaggggagaatgtgtaaaaacagaagaggtttatgggagcagagggcatcgtgag 328
Query: 389 tgattatgtattgttgatgtgggcacagccatgtcaaagactctaatgcctca 441
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgattatgtattgttgatgtgggcacagccatgtcaaagactctaatgcctca 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_b06.g1 MSMg01no466_b06.g1 CHROMAT_FILE:
MSMg01no466_b06.g1 PHD_FILE: MSMg01no466_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:26 2005
(473 letters)
>mm_chr3_117388878_117389750
Length = 873
Score = 861 bits (445), Expect = 0.0
Identities = 463/469 (98%)
Strand = Plus / Plus
Query: 5 ctcaaaaatgaagtattgaagtagatctctgtcaactaccaaatgctatttcagtccgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctcaaaaatgaagtattgaagtagatctctgtcaactaccaaatgctatttcagtccgtg 264
Query: 65 catgggcccacctcactccacaccatctgcttctcagggagcaattagtctgaaactaca 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgggcccaactcactccacaccatctgcttctcagggagcaattagtctgaaactaca 324
Query: 125 acatgcacattgaaattctgttaacagcgaacagaatattaatgtgtctgccatggccat 184
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 gcatgcacattgaaattctgttaacagtgaacagaatattaatgtgtctgccatggccat 384
Query: 185 ttttatctaccaaaattttagtgttaattctgagtaaaataggtataacgtttcaatcta 244
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||
Sbjct: 385 ttttatctaccaaaattttagtgttaattctgagtaaaacaggtataacattttaatcta 444
Query: 245 ttccgttaattaaaaatactgaataaaagatataattagcttaaaattatgtaacagaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccgttaattaaaaatactgaataaaagatataattagcttaaaattatgtaacagaac 504
Query: 305 agagaagtgagtttaacaacactgtgttgtagcaacaaacatgtggggaacggttctata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agagaagtgagtttaacaacactgtgttgtagcaacaaacatgtggggaacggttctata 564
Query: 365 ttaagttaatagttacttgtgaaaaatgctaaatactttgttaaatcagttgacctagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaagttaatagttacttgtgaaaaatgctaaatactttgttaaatcagttgacctagga 624
Query: 425 ctctgactttggaatccccttttcttttacagaaccacgtcactgcctt 473
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctgactttggaatccccttttcttttacagaaccacgtcactgcctt 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
