BAC Information

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BAC

Clone NameMSMg01-466D01
Chromosome3 (Build37)
Map Location 53,660,910 - 53,661,219
singlet/doubletsinglet
Overlap geneUfm1
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155
Downstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466D01.T7 (MSMg01no466_d01.b1)MSMg01-466D01.TJ (MSMg01no466_d01.g1)
ACCAG550194AG550195
length815771
length of high quality
(start - end)
318 (45 - 362)324 (79 - 402)
definitionCHROMAT_FILE: MSMg01no466_d01.b1 PHD_FILE: MSMg01no466_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:35 2005CHROMAT_FILE: MSMg01no466_d01.g1 PHD_FILE: MSMg01no466_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AATAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCCTTGATTTCCAATAAAGCGTTAGGACAGAAATCCTTAAACCAGC
CTTTTTGAGGATTCTGTTTTTTAGCAGCATCCAAAAGTATTGTTGCAGAG
ATGATGTGAAGCATTGGTTGGTGTCCTTAATGAAGAGGGAACTTTAAATA
AGCTGCTAATATAGTCACAGTGGATAAGGAACCAGGGATGCAAAGATAGC
CAGGCCCTTCCCAGAAGAGCAGAGGAAGTGAGGAGGAACAGGAGGCTGGC
AGTGTCCAAAGGCAGAGGTCAGAGAACGAAGCCGCAGTAGGGGTGGGAAA
GTGTGAAAGGTAGAAGAGTACTGTGCTCAGTGCCAACAGATATTGCTTAG
GTATCAAAACTCTTCGTACTCCTCTACTAGGACCTACATAGGATTTCAGT
TCTGTCTTCCCTTTTGCCCGGCACTCTTTCTTCTTCATAACGTAGCTAGA
TTACCTTCTCTGCCCGAGAGCATCTTCCTTACCTTCTCACACCACCCTAC
CACGTTATTTCAGTATTCCTCTCACCCATAATGTTTTGTCTTCTTTGTCG
CATCCTCTCAGGCATTCCTTCTCCCGTCTTCTACTATCCCCCCCTTTTTC
TTCTCTTCCCCCCCTACATCCTCTTTTTTCTTTCATCCTTCTTTCTCTCT
TCACTACCCCCCACCCCCTTCTCTCATTACACCGTACTTATCCACCCACC
AGCCCACTCCTCTTCTTTTCCCTCCCTTCTTCCTTCCTTTTTTTCTCCTA
CTTCTTTTGCTGATG
CCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATC
ATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGG
GTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGT
GGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGG
CAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCT
CTGTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTT
CTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCT
CAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGATGG
TGATGGTCCTAAATAGGATCTTTCCCTGACCCTGTGTTGCTTTGTCTCAT
TATGTTGCCATTTGCCTGTATTTTATTATGTTTCCATCCTTAGTAGCTCT
GTGTTTCTTGCCCGGTATCCCTCTTGTTTTCCTTTCTCCTCTATTTCTCT
ATTTTCTTAATCTTCTTTCCTTTCTTCTCTCTTTTCACTACTTTTCTTCG
CCTCCTTCTTTTATTTTTACCTCCTTCTTCCTTTTTTTTTCCCTAGCCCT
TCTCTCTTTTTACATTTCCTTTGCTGTTTTAATCCTATTGTTCCGCCCCT
TTGCCCGTGCTCTTTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_d01.b1 MSMg01no466_d01.b1 CHROMAT_FILE:
MSMg01no466_d01.b1 PHD_FILE: MSMg01no466_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:35 2005
         (318 letters)



>mm_chr3_53660688_53661405
          Length = 718

 Score =  497 bits (257), Expect = e-145
 Identities = 297/313 (94%), Gaps = 6/313 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccttgat---ttccaataaagcgttaggacagaaatccttaaaccagcctttttg 63
           ||||||||||||   |   |||||||| |||||||||||||||||||||||| |||||||
Sbjct: 532 gaattccttgataaat---aataaagcattaggacagaaatccttaaaccagtctttttg 476

                                                                       
Query: 64  aggattctgttttttagcagcatccaaaagtattgttgcagagatgatgtgaagcattgg 123
           |||||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 475 aggattctatttttgagcagcatccaaaattattgttgcagagatgatctgaagcattgg 416

                                                                       
Query: 124 ttggtgtccttaatgaagagggaactttaaataagctgctaatatagtcacagtggataa 183
           | ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 415 tgggtgtccttaatgaagagggaactttaaagaagctgttaatatagtcacagtggataa 356

                                                                       
Query: 184 ggaaccagggatgcaaagatagccaggcccttcccagaagagcagaggaagtgaggagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggaaccagggatgcaaagatagccaggcccttcccagaagagcagaggaagtgaggagga 296

                                                                       
Query: 244 acaggaggctggcagtgtccaaaggcagaggtcagagaacgaagccgcagtaggggtggg 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 295 acaggaggctggcagtgtccaaaggcagaggtcagagaacgaagccgcagcaggggtggg 236

                        
Query: 304 aaagtgtgaaagg 316
           |||||||||||||
Sbjct: 235 aaagtgtgaaagg 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)