BAC Information

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BAC

Clone NameMSMg01-466F11
Chromosome3 (Build37)
Map Location 18,089,602 - 18,089,784
singlet/doubletsinglet
Overlap geneCyp7b1
Upstream geneEG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466F11.T7 (MSMg01no466_f11.b1)MSMg01-466F11.TJ (MSMg01no466_f11.g1)
ACCAG550310AG550311
length728754
length of high quality
(start - end)
183 (125 - 307)353 (86 - 438)
definitionCHROMAT_FILE: MSMg01no466_f11.b1 PHD_FILE: MSMg01no466_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:47 2005CHROMAT_FILE: MSMg01no466_f11.g1 PHD_FILE: MSMg01no466_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTCTCTATCAATAATTGCGGCGCTAAAAGAATCCCATACGTACCCGA
GCGCNGGAATCACTATATCTAATCCCCGGTTTTTGGTTTTGTTTTTGTTT
TTGTTTTTCTGGAAGGATAAATCGAAAAAAGTCACTCAAGTAAAAAAATC
ACACAGGTCCCTCACAACTTTGAACATATCAGGGATATGGAAAGGCTCTG
TGTTACCACAATTTGTGGCTATAGTAATTTCAATGCAAAAGTAATAGTAT
TATAATTATGTTAGGTTATTTTTTAGAAGATATTGTAGAAAATATTGATC
ACCTAAAGCTCTGTTAATAGGTTTAGACATGGATATGAGTTATGTCAAAA
GCAAAGCTTATTTGACCGCTTTTTGTGAATAATATTTGAAGCTACACTGG
TGCCTGGGATAGTTCTCTGCCCCCCACAGGAGACTATGGAGGTTTTGGCT
GTATTATTCTCCATCTAGCATACGAGACTTAAAAACGTCTTGTCTTCAAG
TATTCTGTTTTTACCTGTTATATATTTGCCATTGTATCTTTTTTTATTAT
ACCCTCAATACTCCTTATTGATCAACCTTGATTCTTACCCCCCTCTATAT
CAAATATCAGACATACACACATACATACTCAACATGTTTATTTTTTTTTT
TTTTCCTCAATTGATTTCTTTTTTTCTTAACCAACTTCATTCTTTTACGA
TTTATTTATATTTTTATTCTTTACACTG
CCGAACCCCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTTT
GCCCCATTTTTAATAAGGTCATTTGATGCTCTGGAGTCTATCTTCTTGAA
TTCTTTGTATATATTGGATATTATTAGCCTTTTATTGGATGTAGAATTGG
GAAGATTGTTTCCCAATCTGTTGGTTGCCTTTTTATCCTATTGACAGTGT
TCTTTGACTTACAGAAGCTTTGCAATGTGAGGTCCCATTTGTCGATTCTC
AATCTTACAGCACAAGCCATTTTTGCTCTGTTCAGGAATTTTCCCTCTGT
GACCATCATATCTTCGAGGATTTTCCCCACTTTCTCCTCTATAAGTTTCA
GTATCTCTGGTTTTATGTGGAGCTTCTTGATCCGTTTAGACTTGAGCTTA
GTACAAGGAGACAAGAATGGATCAATTTACCTTCCTCTACCTGCTTTCCC
GCAGTTGTGCCAGCACCACTTTGTGATATCGCTGTTTTTTTTTCTATTGC
ATGGTTGTATGCCCCTCTCCCAATATTCCCTCGTCCATAACTTATCTCCC
CTCCTTCTCTGTGTCTTGGTTCTCTCCTTCCCCCCTTTTTTTTCTCTTTT
CCCTTTTTCTCCCTCTTTTTTGCCGTTCCTTCTCTCGCTTATTTCCCTCC
CGCTTCTCTTCTTCTGCCGCGTAACAACCCTCCCCCTTTTTATTCTTTTA
TCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_f11.b1 MSMg01no466_f11.b1 CHROMAT_FILE:
MSMg01no466_f11.b1 PHD_FILE: MSMg01no466_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:47 2005
         (183 letters)



>mm_chr3_18089402_18089985
          Length = 584

 Score =  300 bits (155), Expect = 4e-86
 Identities = 176/183 (96%), Gaps = 1/183 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaagtcactcaagtaaaaaaatcacacaggtccctcacaactttgaacatatcaggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 aaaaaagtcactcaagtaaaaaaatcacacaggtccctcacaactttgaacacatcaggg 324

                                                                       
Query: 61  atatggaaaggctctgtgttaccacaatttgtggctatagtaatttcaatgcaaaagtaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 323 atatggaaaggctctgtgttaccacaatttgtggctataataatttcaatgcaaaagtaa 264

                                                                       
Query: 121 tagtattataattatgttaggttatttttt-agaagatattgtagaaaatattgatcacc 179
           ||||| |||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 263 tagtagtataattatgttgggtgatttttttagaagatattgtagaaaatatttatcacc 204

              
Query: 180 taa 182
           |||
Sbjct: 203 taa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 584
Length adjustment: 8
Effective length of query: 175
Effective length of database: 576
Effective search space:   100800
Effective search space used:   100800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)