BAC Information

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BAC

Clone NameMSMg01-466I16
Chromosome3 (Build37)
Map Location 116,370,964 - 116,371,458
singlet/doubletsinglet
Overlap genenone
Upstream geneEdg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1
Downstream geneSlc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466I16.T7 (MSMg01no466_i16.b1)MSMg01-466I16.TJ (MSMg01no466_i16.g1)
ACCAG550464AG550465
length852762
length of high quality
(start - end)
96 (121 - 216)495 (79 - 573)
definitionCHROMAT_FILE: MSMg01no466_i16.b1 PHD_FILE: MSMg01no466_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:04 2005CHROMAT_FILE: MSMg01no466_i16.g1 PHD_FILE: MSMg01no466_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATCTAAATTTGGGCGCTAAACGAANCACATATACTTATCTGCGCGGA
ATCAAGGNATTTCGAAAAAAAAGTGAGTTCCAGGACAGCCAGGGCTATAC
AGAGAAACCCTGTCTCACCAAAAACCAAAAAAGAGTAAAGTTGAAAAGGG
CATGAGATCTTTGGCAGATTTCTCATCCTCCATGTTTCTCTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTTATATGAGAGGAAATAAGCATTTTTTTTTTT
TTTGTTCAGGGCTAGTGTACGTATGTATTTTTTTTGCTAGCTCAGAAAAA
AGAGAAGAGTTTACAGTAATTTTGCCGAAGCGACCGAAACAAGCGCAGAG
ACATTGTTTTTTTTTCTCCTCCCCCCTTTTTCTTACCCATTTATTCCCTA
CAGATCGTTTTTTTTACGTATTTATATACCCCACCTTTTTTTCATCTCTT
TTTCCCTGTTTGCCTTTTTTCTATCCCATATATATATATATGTTATTTTT
TTCTGCTTTCCCCTCCTTATCACTTTTATTATTATCTTTCACGACTCCCT
CGTTTCTTGTTATGCTCACATCCATACTCAATTCTGTTTCTCTTATTTAT
TACACTCCCACTTCTTACATATAACCTTAATATTGGTATCGTCTGTTCTT
TTTTCTATTATCTATCTCTTTTTTCTTTTTATTTTTTTTTCTCCTCCTCC
ACTAACCCACAATACAATTCTTTCTTTTTTTTTTTTATTTCCCGATATGC
TGTCTCACTTCTTTATTTCTTACCCACCGTTCTACTGATTATCACCACTT
ATTGCCCCAAATTAACTTATAAATACACTATTACCACTCCTCTATTCTTT
TG
TTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGATACAGCCCATGACGTTT
TCTCAGCTACACTGGCACAGCCCATCACAGCACGACTAAAGCTTCGCAAG
TGGAGAACCTTACATGACGCCAACATAGTTCATACACAATCACATCTAAG
TGATAAGGAATGGAGAGAGCGTAAAATAAACGGAAAACAAAATTCTCAGA
GATATAATTAAGAAGAAAGTAAAAAAAAGAAGAGAGAGACAAAGAAAAAA
GAAAAAGGAAAAAGAAGAGATAGACAAGGGGAGAGAGATGAGCCAGGGTT
CCACTGTGAAATGCAGGCTTGCCCTCAGACTTGCCTCAAGTAACCCCATT
GTCTCAGCCTCAGTTCATCTTGCTTGTGATGTGCTCCTAGCAAAAGAGGC
CTTTAAAAAAAAAACAAAAACAAAAACAAACAAACAAAAAAACAGAGTAA
ACCAGAGCTCTCTCTCTTTTTTTTTTTCTTTTTAAGACAGGATCTCCCTA
CGCAGCCTTGATTAAACTATCAGTGTCAGACTCCAAAGATCTGCCTGAAC
CTCCCAAGGGCTGGGGATTTAAAGGGCGGCACCACCATGCCCGGTAAACT
TTCTAGGCTTTCCTTTAACGGTTTCCTCTGTATGGCCGGCCCAACCTCAG
AGGTCGCCTTGCCTTTATATTCTTCTTATTACCCCTTTTACTACCCCTCA
CCATATATGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_i16.g1 MSMg01no466_i16.g1 CHROMAT_FILE:
MSMg01no466_i16.g1 PHD_FILE: MSMg01no466_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:04 2005
         (495 letters)



>mm_chr3_116370764_116371658
          Length = 895

 Score =  874 bits (452), Expect = 0.0
 Identities = 484/496 (97%), Gaps = 6/496 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagatacagcccatgacgttttctcagctacactggcacagcccatcacagcacgacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagatacagcccatgacgttttctcagctacactggcacagcccatcacagcacgacta 260

                                                                       
Query: 61  aagcttcgcaagtggagaaccttacatgacgccaacatagttcatacacaatcacatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttcgcaagtggagaaccttacatgacgccaacatagttcatacacaatcacatcta 320

                                                                       
Query: 121 agtgataaggaatggagagagcgtaaaataaacggaaaacaaaattctcagagatataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgataaggaatggagagagcgtaaaataaacggaaaacaaaattctcagagatataat 380

                                                                       
Query: 181 taagaagaaagtaaaaaaaagaagagagagacaaagaaaaaagaaaaaggaaaaagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaagaaagtaaaaaaaagaagagagagacaaagaaaaaagaaaaaggaaaaagaaga 440

                                                                       
Query: 241 gatagacaaggggagagagatgagccagggttccactgtgaaatgcaggcttgccctcag 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagacaaggggagagagatgagccagggttccactgtgaaatgcaggcttgccctcag 500

                                                                       
Query: 301 acttgcctcaagtaaccccattgtctcagcctcagttcatcttgcttgtgatgtgctcct 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 acttgcctcaagtaaccccattgtctcagccccagttcatcttgcttgtgatgtgctcct 560

                                                                       
Query: 361 agcaaaagaggcctttaaaaaaaaaa--caaa--aacaaaaacaaacaaacaaaaaaa-c 415
           ||||||||||||||||||||||||||  ||||  |||||||||||||||| ||||||| |
Sbjct: 561 agcaaaagaggcctttaaaaaaaaaaaacaaacaaacaaaaacaaacaaaaaaaaaaaac 620

                                                                       
Query: 416 agagtaaaccagagctctctctctttttttttttctttttaagacaggatctccctacgc 475
           |||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 621 agagtaaaccagagttctctctctttttttttt-ctttttgagacaggatctcactacgc 679

                           
Query: 476 agccttgattaaacta 491
           ||||||||||||||||
Sbjct: 680 agccttgattaaacta 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)