BAC Information

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BAC

Clone NameMSMg01-466M06
Chromosome3 (Build37)
Map Location 152,645,009 - 152,645,245
singlet/doubletsinglet
Overlap geneSt6galnac5
Upstream geneLOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M06.T7 (MSMg01no466_m06.b1)MSMg01-466M06.TJ (MSMg01no466_m06.g1)
ACCAG550635AG550636
length795771
length of high quality
(start - end)
403 (78 - 480)237 (78 - 314)
definitionCHROMAT_FILE: MSMg01no466_m06.b1 PHD_FILE: MSMg01no466_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:23 2005CHROMAT_FILE: MSMg01no466_m06.g1 PHD_FILE: MSMg01no466_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCAACXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGC
GGAATTCCTGAGTTTTCAGATACCCAAATCTCTAAATGCTTTAAGGATAT
AAAGCAGGCTGTCAGCACATGGCCATTAAAAATATTACATGAACCGGGAA
GTGGTGGCACACACCTTTAATCCCCACACTCAGGAGGCAGAGGCAGGCAG
ATTTCTGAGTTCGAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC
CAAGGCTACACAGAGAAACCCTGTCTCGAAAAAACCAAAAACCAAAACAA
AACAAAACAAAAAAAAAATGAAATACAAGGTTCATGGAAGAATTAGAATG
ATATGTGTAGATCATCTACTTCTATCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTTGCTAAGCCAAAAAATG
AAAGAAACATGGGATAATTTTTGGCATGCAGAGATTTTACAAGCACCTCC
TCATGACCACGTCTACCAGAAAACACTTGAGAGAAGCTAAAATGTATTCA
AGCTAAATGTAAGGTATGCAAAAATGGCTTGACCCCACGACCACTATAGG
CCAGAGGGGTCCCCATCTATGCTAAAGGGGATTACTCCGGGAGGGCTCCT
GCTTTTTTTCCCTGGTTAAGAGCACCCTCTGGGCCCTGGGCCCTGGACTT
ACTTATCAAATCCCCACTGTGCGCCACGATTAACATATCTTGTTTACTCC
TATCTTAATTATTGTTTATCATGTTCTTATCCTTCCTTATTTGTC
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGCAAGCGCGTCCGGAGCCA
CTTTTTCTTGGAGGTTGTCCATGGTGGGTGATGGGGCGGAGGCTGCTCAG
ATGCTCACCTGGCAGTGATGGCAGCTGAGCGGGAGCAGGAGCCGCGGGAC
CGGGAAGCGCTGCTGTTGCAGAGATTAGAGGAGAATTAAAACTGAGCCGG
ACCCTCCGAGTCTTAGCGATCCACACACTGCCGCCTGCCGCCGCCTGCTG
GGTCCTAGAGTCCTCTGTTTTTCCCCCTCCCAACCCCCAAACCATCTTCT
CAGGGAAGTGGAATTTCTGGGGCAAGACTGTTACCATAAAGGTGCACCCA
TTCCTTAGTTTGAAGATTTATTACCTTTGAATGAGGCTGTCAAGTTAACA
GGACGCAGAATCTCAGTTTGATCCTGACCTCGCCAGCCCTTTGAAACTTT
ACTAAATTTTCCAGTCGTGGGGAGCTAAGTTCACACATTAGTTTTCCCTT
CCCTATGGCTCCATAGTCTCTTTATCATTCGCCTTTTCGCCCCCCTCCGC
CGGCCATCTTTTTCTCTGCATTTTTCCCTTTTTTATTTTTCCTTCACTTG
TTATCTTTTTTTTTTTCTGTCTTCCCCCAATTCCTTCTTCTCCCATTTCT
TTCCTTTCGTTTTTCCTCTTTCTTTCTCTCTCTTTTTTGCTCCTCTTTCT
TCCTCTCGCCTCATCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m06.g1 MSMg01no466_m06.g1 CHROMAT_FILE:
MSMg01no466_m06.g1 PHD_FILE: MSMg01no466_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:23 2005
         (237 letters)



>mm_chr3_152644809_152645445
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggcaagcgcgtccggagccactttttcttggaggttgtccatggtgggtgatggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggcaagcgcgtccggagccactttttcttggaggttgtccatggtgggtgatggggc 260

                                                                       
Query: 61  ggaggctgctcagatgctcacctggcagtgatggcagctgagcgggagcaggagccgcgg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ggaggctgctcagatgctcacctggcagtgacggcagctgagcgggagcaggagccgcgg 320

                                                                       
Query: 121 gaccgggaagcgctgctgttgcagagattagaggagaattaaaactgagccggaccctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccgggaagcgctgctgttgcagagattagaggagaattaaaactgagccggaccctcc 380

                                                                    
Query: 181 gagtcttagcgatccacacactgccgcctgccgccgcctgctgggtcctagagtcct 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcttagcgatccacacactgccgcctgccgccgcctgctgggtcctagagtcct 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)