Query= MSMg01no467_a05.b1 MSMg01no467_a05.b1 CHROMAT_FILE:
MSMg01no467_a05.b1 PHD_FILE: MSMg01no467_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:44 2005
(609 letters)
>mm_chr3_75499430_75500439
Length = 1010
Score = 1125 bits (582), Expect = 0.0
Identities = 600/608 (98%), Gaps = 5/608 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagcagatcac---ccacgtttccaacagcagttcccagtaatggacacagtg 61
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagcaga--acaatccacgtttccaacagcagttcccagtaatggacacagtg 262
Query: 62 gctagttaaaggctttcaagggacttgaatctgagaaaagaagtgtagtccttgaaagag 121
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 263 gctagttaaaggctttcaagggacttgaatctgagaaaagaagtgtagtcctcgaaaaag 322
Query: 122 ttcagcattccaaacaccttcctttgtgttccttgaccaagtctgagttgggacagaagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcagcattccaaacaccttcctttgtgttccttgaccaagtctgagttgggacagaagt 382
Query: 182 gaggtgatagcctagggttgtacccctcaaaatgaagctcctacccaaatcaacttggag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaggtgatagcctagggttgtacccctcaaaatgaagctcctacccaaatcaacttggag 442
Query: 242 tcgtgtctcctcatctgtttagtgagtctaatagatcccaaatactgagaaccccaaatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcgtgtctcctcatctgtttagtgagtctaatagatcccaaatactgagaaccccaaatt 502
Query: 302 tcctccaagactgtcgtttaaaccaatgacatgtggctctaatgagaagtgatcagtccc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcctccaagactgtcgtttaaaccaatgacatgtggctctaatgagaagtgatcagtccc 562
Query: 362 ctttctggaggaaggcagaggaaaatctcaggccagaaagaggtttgcactgtactgttg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttctggaggaaggcagaggaaaatctcaggccagaaagaggtttgcactgtactgttg 622
Query: 422 gacatatatgtttaggttccattagaggcaaaatttgcagagggacctttcatagtcttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gacatatatgtttaggttccattagaggcaaaatttgcagagggacctttcatagtcttt 682
Query: 482 ccatggttgtggccaccagggtccataaaacacaggtcagtcggtggaaagtaacttggt 541
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 683 ccatggttgtggccaccagggtccataaaacacgggtcagtcggtggaaagtaacttggt 742
Query: 542 accttgccagcacagaacgacagactatcctctgactggggttagcggtggagataaagg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 accttgccagcacagaacgacagactatcctctgactggggttagcggtggagataaagg 802
Query: 602 gaggacaa 609
||||||||
Sbjct: 803 gaggacaa 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_a05.g1 MSMg01no467_a05.g1 CHROMAT_FILE:
MSMg01no467_a05.g1 PHD_FILE: MSMg01no467_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:44 2005
(161 letters)
>mm_chr3_75669244_75669804
Length = 561
Score = 261 bits (135), Expect = 1e-74
Identities = 157/171 (91%), Gaps = 11/171 (6%)
Strand = Plus / Minus
Query: 1 aactcagctgtagaaatcattaccaagctgttgtatgatcttgactgaatagtggagaca 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aactcagctgtggaaatcattaccaagctgttgtatgatcttgactgaatagtggagaca 285
Query: 61 tcaaggtcattgtttgggacagtaagtgtgcaggtctgccctgtccttcatcaagggctc 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 284 tcaaggtcattgtttgggacagtaagtgtgcaggtctgccctgcccttcatcaagggctc 225
Query: 121 tatgaaattcattgtaagctataa-----------atgatctgtcatgaag 160
||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 224 tatgaaactcattgtaagctataagaagctaaagcatgatctgtcatgaag 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space: 84609
Effective search space used: 84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
