BAC Information

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BAC

Clone NameMSMg01-467E03
Chromosome3 (Build37)
Map Location 82,047,246 - 82,047,637
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467E03.T7 (MSMg01no467_e03.b1)MSMg01-467E03.TJ (MSMg01no467_e03.g1)
ACCAG551010AG551011
length747753
length of high quality
(start - end)
395 (47 - 441)309 (80 - 388)
definitionCHROMAT_FILE: MSMg01no467_e03.b1 PHD_FILE: MSMg01no467_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:04 2005CHROMAT_FILE: MSMg01no467_e03.g1 PHD_FILE: MSMg01no467_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCACGTTTCTCCCTTCTGCCTTCCTGTGAACCTGTGCCCCAGTG
GGTATAGTCATTTAATTGCTTGGATGATAAACGAGAGTCCCTTTCCCCTC
TCATCTGCTACTCAGAGAGACAGTTCTCTAACAAAGCTTTTCAACACTTA
AATCTTTTGTTGAATATGTTCTTAAATAATGGTTTCTCTCTTTTAACCTA
TCCATTTAAAGTTGATAATCCAACTGATGGATTTGTGACAAGCTAGGCCT
CTTTTTCTGGATGCCTCTGTTAAGGCTATGTTTTAGAAGTTGATTAGAAA
GACAATCTAATGTCCCCTTCAAACCTCAGTAGATATATGCATGTGTTACA
TTTTTGGAGTTTCTCTATGTTGATGCTTTGTTGATAATAAATGCAAGACA
CTGTGCCCCATTGGAAAGCAGAAAGACCAGCCCTTACATCCTCTGGGATT
GTCTGCTTTAACATGTTCTAGGTATTTAATGTACTTTACTTGTATTATAA
TTTCTCAGTTACTAGAATGGTACTATAAAGTCTTTCTTCTTCTGCCCCAG
GTATAGTCCACTTTCTGCTTCTTGTTTCAGAAGATCCTTTTTCTTTCTTT
TTCTATGTTTAGATTGATCTTTTTATACTTGTCACTCCTCCGCCTACTTT
TGTTGAATATATCTTTTTCACCCTTTATCTGCCTTTTTTCCCCGTTT
NCCTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTCAGTGGGAGACCCTA
TCCTGGAATGGAAGATGAAGCGACTGCCCAAAATGTGAAGCATGAAGTCT
AGTCCAAATAGATACATCTACAAAATTACTACCCAACGCTCAGGGATCAC
TTCAGAAGAGGGACCAGAAGGACTGCAAGATCCAGAGGAATAAGAGTTTG
CTGTGAGATTATCTTTCCTCAATATGTCAGAAGCTACACTGACAAAATCT
CACCATCGTACCTGCCTAAATAGAGCAGGAGTAGAGCAAGAACGATACCA
TTAGACATGTTAATGTGGATGGATGGGGGAAGTGCCTGACAGTTCATCCC
TGTACTAAGAAGTCAGCCAACCCACCAATGCTCAGATCTCACGATTCCGC
GTGCTCTCATATAATATCTCCCTTCTATATTACTCATATATCAATTTATC
ATCTCTCGATCTTTTCGGCCTTTCCCCTCCATCTCTTTCTTCTTCCCGAT
TCTCTCCTGCTTCTCCTTTCATCTGCTCCCCCTTCTATCCCCATTTCCCA
TCCATTCTCCCTTCCCTCTACCCATCCCGTTATTTATCCTTTTTCCAACC
CCTCTCGCCCTTTTATTTCTTTTTAACTCTGTTTCCTCTCCTATTTTCTC
TCTCCTTTTTCCCACCCCTTTTACTCTTTCCCTTTTCCCTCCCCTTTCTC
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_e03.b1 MSMg01no467_e03.b1 CHROMAT_FILE:
MSMg01no467_e03.b1 PHD_FILE: MSMg01no467_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:04 2005
         (395 letters)



>mm_chr3_82047043_82047837
          Length = 795

 Score =  681 bits (352), Expect = 0.0
 Identities = 382/392 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcagcacgtttctcccttctgccttcctgtgaacctgtgccccagtgggtatagtc 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaattcagcacgttcctcccttctgccttcctgtgaacctgtgccccagtgggtatagtc 536

                                                                       
Query: 64  atttaattgcttggatgataaacgagagtccctttcccctctcatctgctactcagagag 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 535 atttaattgcttggatgataaatgagagtccctttcccctctcatctgctactcagagag 476

                                                                       
Query: 124 acagttctctaacaaagcttttcaacacttaaatcttttgttgaatatgttcttaaataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acagttctctaacaaagcttttcaacacttaaatcttttgttgaatatgttcttaaataa 416

                                                                       
Query: 184 tggtttctctcttttaacctatccatttaaagttgataatccaactgatggatttgtgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 415 tggtttctctcttttaacctatccatttaaagttgataatccaactgatggatttatgac 356

                                                                       
Query: 244 aagctaggcctctttttctggatgcctctgttaaggctatgttttagaagttgattagaa 303
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 355 aagctaggcctctttttctggatgcctctgcaaaggctatgttttagaagttgattagaa 296

                                                                       
Query: 304 agacaatctaatgtccccttcaaacctcagtagatatatgcatgtgttacatttttggag 363
           ||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||| ||
Sbjct: 295 agacaatctaacgtccccttcaaacctcagtagatgtaggcatgtgttacacttttgcag 236

                                           
Query: 364 tttctctatgttgatgctttgttgataataaa 395
           ||||||||||||||||||||||||||||||||
Sbjct: 235 tttctctatgttgatgctttgttgataataaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)