BAC Information

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BAC

Clone NameMSMg01-467E19
Chromosome3 (Build37)
Map Location 13,480,310 - 13,480,735
singlet/doubletsinglet
Overlap geneLOC100039861, 0710005M24Rik
Upstream geneLOC100039798, EG668033, LOC668037, LOC100039823
Downstream geneLOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467E19.T7 (MSMg01no467_e19.b1)MSMg01-467E19.TJ (MSMg01no467_e19.g1)
ACCAG551042AG551043
length779763
length of high quality
(start - end)		433 (36 - 468)438 (69 - 506)
definitionCHROMAT_FILE: MSMg01no467_e19.b1 PHD_FILE: MSMg01no467_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:07 2005CHROMAT_FILE: MSMg01no467_e19.g1 PHD_FILE: MSMg01no467_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGTGTCGCTATACGACTCACTATTTTCCGAGAATCCGCGGAATCATATA
TTTTACCTTATTTGCTGTTTTGTTATTCACTATCCTTGTGTTTAATAGAA
AATTAATCCTAATTTGTCACTTGTAATATCCTTCAAACTACTTCATGTTT
CCACTGACATAAGTTATTTACCTTTGAGTGTTTCTGTTGCTTCCCAGCAT
GAGACATCCCAGCCATCCTGGGTATCAGACTTTACCAGAACTGGGCTTCT
TAGCTGAGGATTGTTCTCCACAGCCATGATACATTAGGAGACGTGTCCAG
AGTGCTGATTTCATATGACCTTTAAGTTTCTTCACTAAACATGGATAATG
AAACTATGGCATGTGTCTTTAAAAGCTTCACAGTGCATTGTAATACTTAG
AGATTATACCTTTCTTTGTTTATTTCTTTCTTAGAATAGCAATATTTGGT
TTTGGTTTTTTATTTTGTTTTGCTATCTCTACCTGTACAAATTATTTTTA
TATTTCTCTGATATATTTTCATTGCTCTTTCCTATGAAGCTCATGTTACT
TATATAATATACTCTCTCCCACTCACCACTTCTTTCCTCTCATCTTTATT
TGCAAATTTGATATGTTCTCTCTTTATCAGCGCAATTCTTCCTTAATTTC
ACATCCGATTTCTATCTCTAGACACTATATCCCTTTAACCCACTTCTTTT
ACATTTATATTTATTTTCCACCACATTTATCTCCTCTTTAATACAACTTC
TACTATTTTCTACTTTTTTTGACCTTTTA

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAAGCTGGAGTCCAGAAAATCAAATAAACC
TATTTAAAAATGGGGTACAGAGCTAAACAAAGAATTCTCCACTGAAGAAT
ATGAATAGCTGGAAGCACCTGAAAAAATTAGACAGAAGGAAGGACCATCC
AGAGACTTCCCCACCTGGGGATCCATCCTATAATCAGCCACCAAATACAG
ACACTATTACATATGCCAGCAAGATTTTGTTTAAGGGATCCTGGTATAGC
TGTCTTGTATGAGGCTATGCCATTGCCTGGCAAATACAGAAGTGGATGCT
TTCAGTCATCTATAAGATGGAACACAGGGCCCCCAATGGAGACGCTAGAG
AAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACA
ATATGAACTAACCAGTACCCTCAGAGCTTGTGTCTCTAGCTGCATATGTA
GCAGATGATGACCTAGTTGGCCATCACTGGGAAGAGAGACCCCTTGGTCT
TGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGTTCAAGATTTGG
GAGGGGTTGGGTAGAGTAAACACCTCTGGCTACGTGTATATATCCCTCTC
CTTTTTTTCTTCTACCCCGCCTGTTTCCGTCTGTTTCTCTTCTCCTCATT
CTCCCGCCTGTGTCCGCTCCTTTTCCTCATCCTTTCCTCCTCATATCGCG
CACTCTCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_e19.b1 MSMg01no467_e19.b1 CHROMAT_FILE:
MSMg01no467_e19.b1 PHD_FILE: MSMg01no467_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:07 2005
         (433 letters)



>mm_chr3_13480102_13480935
          Length = 834

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%), Gaps = 1/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcatatattttaccttatttgctgttttgttattcactatccttgtgtttaatag-aaaa 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 634 tcatatattttactttatttgctgttttgttattcactatccttgtgtttaatagaaaaa 575

                                                                       
Query: 68  ttaatcctaatttgtcacttgtaatatccttcaaactacttcatgtttccactgacataa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttaatcctaatttgtcacttgtaatatccttcaaactacttcatgtttccactgacataa 515

                                                                       
Query: 128 gttatttacctttgagtgtttctgttgcttcccagcatgagacatcccagccatcctggg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gttatttacctttgagtgtttctgttgcttcccagcatgagacatcccagccatcctggg 455

                                                                       
Query: 188 tatcagactttaccagaactgggcttcttagctgaggattgttctccacagccatgatac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatcagactttaccagaactgggcttcttagctgaggattgttctccacagccatgatac 395

                                                                       
Query: 248 attaggagacgtgtccagagtgctgatttcatatgacctttaagtttcttcactaaacat 307
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 394 attaggagacgtgtccagagtgctgaaagcatatgacctttaagtttcttcactaaacat 335

                                                                       
Query: 308 ggataatgaaactatggcatgtgtctttaaaagcttcacagtgcattgtaatacttagag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggataatgaaactatggcatgtgtctttaaaagcttcacagtgcattgtaatacttagag 275

                                                                       
Query: 368 attatacctttctttgtttatttctttcttagaatagcaatatttggttttggtttttta 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 attatacctttctttgtttatttctttcttagaatagcaatatttggttttggtttttta 215

                 
Query: 428 ttttgt 433
           ||||||
Sbjct: 214 ttttgt 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space:   349800
Effective search space used:   349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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