BAC Information

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BAC

Clone NameMSMg01-467I12
Chromosome3 (Build37)
Map Location 34,991,066 - 34,991,498
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467I12.T7 (MSMg01no467_i12.b1)MSMg01-467I12.TJ (MSMg01no467_i12.g1)
ACCAG551218AG551219
length718734
length of high quality
(start - end)
240 (76 - 315)433 (75 - 507)
definitionCHROMAT_FILE: MSMg01no467_i12.b1 PHD_FILE: MSMg01no467_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:26 2005CHROMAT_FILE: MSMg01no467_i12.g1 PHD_FILE: MSMg01no467_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATATTTGCGGGCGTTAAAGGAATCACTATATGCAGAACATCCGCGGA
ATTCTCACCTGTGGCACACCAAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
TACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGT
ATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGA
AAATTGGACATATTTCNATTGTAGGATGCAGCAATACCTCTCCTGGGCAT
TTATCCATAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCATCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAGT
GGATGGACCTGTAGGGCATCATCCTGAGTGAGGTAACACATTCCCTAAGG
AACTCTCACCATATGTTCTCTCTGATAAGTGGATATTATTCTCTTTCCTA
GGACACCCATCATATCCTATTACCATTTGTCCACATAATGAAACTCTAGA
ACAATAACGACTGAAGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCACATTAGAATCAACTCCTATTC
CCATGGACTTCACAGGGTAGAAGGACAGACAGGCCAGCATCAGGCCTGGA
GCCAGAGGTGGCTTGGTGAGTCAGTTTCTGATCATGGCTACCTCTTTAGA
ATTATCCAGGAAAAGAAAGAGTGGTGCCCACTGTGCCCCCAAGAACAACA
GTGGCCCGGGCAGTAGTTGGGTTGGAGTGAAGGGACAAAGAGACATTCTG
GATTTGACTGAAAGATGTTTGTACCAGACCACTTGAGACTCTGAAACCCC
TGTAGCTCAGCTCCCATTAGATCTTCCCTGCTTTATTGACTGTTGTCCTG
GCCGATCCCTGCTGGGGATAGCCTTGTATGCTGGAGCTGGGGAAGGGTTA
GGGTTGACTCTTATTCTTAATCTGGAACTTTCCATAGAATCATTTGAGAC
TATCTCACGGACTATTGCGTGTCTACTATCTAATGAACACTTCTGACGTA
TTCTAGCCAAGAAGGTGTCTACTGTTATTACCAATGCTCTTTTTACGATG
ATGAAAATTACTTTTCCCAGAACTTGCCCCATGTCTGTCCCCCTCCTCTT
ATATCGGTTCACTTCCCCACCACCTGCTCCGCTTTGGCATTCCCCTCCAC
CCTCTTAATATTATCACCTCCCTCCATATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_i12.g1 MSMg01no467_i12.g1 CHROMAT_FILE:
MSMg01no467_i12.g1 PHD_FILE: MSMg01no467_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:26 2005
         (433 letters)



>mm_chr3_34990866_34991698
          Length = 833

 Score =  793 bits (410), Expect = 0.0
 Identities = 428/434 (98%), Gaps = 2/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcacattagaatcaactcctattcccatggacttcacagggtagaaggacagacaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcacattagaatcaactcctattcccatggacttcacagggtagaaggacagacaggc 260

                                                                       
Query: 61  cagcatcaggcctggagccagaggtggcttggtgagtcagtttctgatcatggctacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcatcaggcctggagccagaggtggcttggtgagtcagtttctgatcatggctacctc 320

                                                                       
Query: 121 tttagaattatccaggaaaagaaagagtggtgcccactgtgcccccaagaacaacagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagaattatccaggaaaagaaagagtggtgcccactgtgcccccaagaacaacagtgg 380

                                                                       
Query: 181 cccgggcagtagttggg-ttggagtgaagggacaaagagacattctggatttgactgaaa 239
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgg-cagtagttggggttggagtgaagggacaaagagacattctggatttgactgaaa 439

                                                                       
Query: 240 gatgtttgtaccagaccacttgagactctgaaacccctgtagctcagctcccattagatc 299
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatgctagtaccagaccacttgagactctgaaacccctgtagctcagctcccattagatc 499

                                                                       
Query: 300 ttccctgctttattgactgttgtcctggccgatccctgctggggatagccttgtatgctg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttccctgctttattgactgttgtcctggccgatccctgctggggatagccttgtatgctg 559

                                                                       
Query: 360 gagctggggaagggttagggttgactcttattcttaatctggaactttccatagaatcat 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 gagctggggaaggattagggttgactcttattcttaatctggaactttcgatagaatcat 619

                         
Query: 420 ttgagactatctca 433
           ||||||||||||||
Sbjct: 620 ttgagactatctca 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)