BAC Information

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BAC

Clone NameMSMg01-467K20
Chromosome3 (Build37)
Map Location 11,986,784 - 11,987,125
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383826, EG667978, LOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K20.T7 (MSMg01no467_k20.b1)MSMg01-467K20.TJ (MSMg01no467_k20.g1)
ACCAG551328AG551329
length745769
length of high quality
(start - end)
540 (38 - 577)244 (66 - 309)
definitionCHROMAT_FILE: MSMg01no467_k20.b1 PHD_FILE: MSMg01no467_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:37 2005CHROMAT_FILE: MSMg01no467_k20.g1 PHD_FILE: MSMg01no467_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGCAGAAATCCGCGGAATTCCTA
TGATTTTCCCTTTAAATATTTTTCATTGCACAGAAATATTTCAGTCATTA
TTTTTAATGTTCTATTTTATTCTCCTACTTCGCTCTTTTCTAAAGTTTTT
CCTTACATTTTTCTGTTTTTCTTTGTTCCTGTTTTTTTAATTATTTTCTT
TATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCTCCATGAAAATC
CCCTATCTCCTCACCCCTCCCACTGCTCACCAACCCACCCACTCCTAGTT
GCAGGCCCTGGCTTTCCCCTATACTGGGGCATAGAGCCTTCACAGGACAA
AGGGCCTCTCTTCCCGTTAATGACCAACTAGGCCATCCTCTGCTACATAT
GCAGCTAGAGCCATGAACCCCACCATGTGATTTCTTTGATTGGTGGTCCC
AGGTAGTCCCAGGGAGCTATGGGGCTACTGGTTAGTTCATATTGTTGTTC
CTCCTATGGAGCTAAAAACCCCTTCAGTTCCTTGGGTCCTTTCTCTAGAG
ACTTAATAGGGGACCATGTGCTCCATTTAATGGATGGCTGTGAACATTTA
CTTCTGTATTTGTCAGACACTGGCAGAGCCTCTCCACAAACAGTTATTTC
AGGGTCCAAGTCCCAAAGCTCCTGTTGGCATCCACCATAGTGTCTCGTTT
AATCGAATTGTTTATTGTATGTAACCCCTTGTCATTCTTATCTCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATCAGAGATAAGTTATGCCAAACTCTCCCAAGAAC
AGCACAGGGAAGAGAAGCTACTTAAGAGTAGTTCAAGGGGGAGAGAGGGG
GGGGATATGAATCACTGAATTTGGAGTTAGTGGTCAGTGCAGTGCAGTAC
AGTGCAGTTGAGTTCATGCAGTTTAGTGTAGGTCAGCAGAAACTGTTGAA
ACCAGATACTAAGAAGGAACAGAAGATTAGAATAAATTTCCAGAGGTAGT
TTGAGGCCAATTGTTTTTTCTCAGTGAAAAATCAAGAAAAAACAAACTGA
ATCATTCAGCTTGAAGAGAAGTTTGACTTTGGTCAAACAGCTCAGTTGAA
CCAGTCAGCCAAAGTTCAGAAAGAACTAGAAAGTGAGAGCTTAGTACTGC
ATCTTAGAGGCTGAAATATCTTAGGCCTAGATTAGATTGTAAGAAGACTA
GAATCATTCTGGCCTACGCTTAGGGATAGAAAAGAGGTATACAGCTTCTG
GGTTTACCCAAAGACATTGTATACATAAGTTTGGTCCAAGCTTTTATCTC
CTACTCCTCCGCTTAGAATAAATTCCCAGTTTTTTCTTTTACTTCTGGGT
AACCTTGCCCTCTCGGCATTACCTCTTTTGTTGTTAACTCGATCAAACCC
CCCCTTTTTCTCTTTCCCTTCTTATACCCCTCTACCCTCTTTTTTCTACA
CTCTATTCCTTCTGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k20.b1 MSMg01no467_k20.b1 CHROMAT_FILE:
MSMg01no467_k20.b1 PHD_FILE: MSMg01no467_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:37 2005
         (540 letters)



>mm_chr3_11986784_11987721
          Length = 938

 Score =  538 bits (278), Expect = e-157
 Identities = 329/348 (94%), Gaps = 7/348 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatgattttcccttt-aaatatttttcattgcacagaaatatttcagtcatta 63
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 342 gaattcctatgattttccttttaaaatatttttcattgcacagaaatatttcattcatta 283

                                                                       
Query: 64  tttttaatgttctattttattctcctacttcgctcttttctaaagtttttccttacattt 123
           |||||||| ||||||||||||   |||||| |||||||||||||| ||||||||||||||
Sbjct: 282 tttttaatattctattttatt---ctactttgctcttttctaaagcttttccttacattt 226

                                                                       
Query: 124 ttctgtttttctttgttcctgtttttttaattattttctttatttacatttcaaatgtta 183
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcctgtttttctttgttcctg-ttttttaattattttctttatttacatttcaaatgtta 167

                                                                       
Query: 184 tcccctttcctagtttcctccatgaaaatcccctatctcctcacccctcccactgctcac 243
           |||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 166 tcccc--tcctagtttcctccatgaaaatcccctatctcctcacctctcccactgctcac 109

                                                                       
Query: 244 caacccacccactcctagttgcaggccctggctttcccctatactggggcatagagcctt 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 108 caacccacccactcctagttgcaggccctggcattcccctatactggggcatagagcctt 49

                                                           
Query: 304 cacaggacaaagggcctctcttcccgttaatgaccaactaggccatcc 351
           |||||||||||||||||||| ||| ||| |||||| ||||||||||||
Sbjct: 48  cacaggacaaagggcctctcctcctgttgatgaccgactaggccatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 938
Length adjustment: 10
Effective length of query: 530
Effective length of database: 928
Effective search space:   491840
Effective search space used:   491840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)