Query= MSMg01no467_l19.b1 MSMg01no467_l19.b1 CHROMAT_FILE:
MSMg01no467_l19.b1 PHD_FILE: MSMg01no467_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:41 2005
(561 letters)
>mm_chr3_40563500_40564460
Length = 961
Score = 978 bits (506), Expect = 0.0
Identities = 528/540 (97%), Gaps = 10/540 (1%)
Strand = Plus / Minus
Query: 23 aatacaagagtttgtacaaataatacaagagttgtagatagaaaatgctaactctttaag 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aatacaagagtttgtacaaataatacaagagttgtagatagaaaatgctaactctttaag 902
Query: 83 gtagccatcaccaacctgcagtggtttcattcatcagcctcagacagtttaggcctgcaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtagccatcaccaacctgcagtggtttcattcatcagcctcagacagtttaggcctgcaa 842
Query: 143 cctgggctgcggccatcacggatcttctctctgcgtcggtgaaaaagctcgggatctggc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cctgggctgcggccatcacggatcttctctctgcgtcggtgaaaaagctcgggatctggc 782
Query: 203 aagaacagtcataagttactgcacctcagcgccacagaattaatatgtaactgcaggaaa 262
|||||||||||||||||||| |||||||||| |||||| ||||||||||||||
Sbjct: 781 aagaacagtcataagttact--------gcgccacagacttaata-gtaactgcaggaaa 731
Query: 263 acatgcgactttaaatcaacatcaaatgctagagtggattcttaaattggatactttcta 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acatgcgactttaaatcaacatcaaatgctagagtggattcttaaattggatactttcta 671
Query: 323 cgccatgcagactggatttggagtgtgaacacaaatgcgattagtatggcagaccaccag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cgccatgcagactggatttggagtgtgaacacaaatgcgattagtatggcagaccaccag 611
Query: 383 ttttgtttgcctcaaagaagcagtgttagtctgtttgctgcacttgagcttgctctctct 442
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 610 ttttgtttgcctcaaagaagcagtgttagtctgtttgctgcactttagcttgctctctct 551
Query: 443 aaggctcattagtgtgacccttgtggaggtagactta-ttaaagatgcttaagggaactg 501
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 550 aaggctcattagtgtgacccttgtggaggtagacttagttaaagatgcttaagggaactg 491
Query: 502 agaggtattggtctagaaaggaatgatggactccacttctgtctggactcttgtgtggca 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agaggtattggtctagaaaggaatgatggactccacttctgtctggactcttgtgtggca 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_l19.g1 MSMg01no467_l19.g1 CHROMAT_FILE:
MSMg01no467_l19.g1 PHD_FILE: MSMg01no467_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:42 2005
(536 letters)
>mm_chr3_40367532_40368468
Length = 937
Score = 992 bits (513), Expect = 0.0
Identities = 531/537 (98%), Gaps = 1/537 (0%)
Strand = Plus / Plus
Query: 1 tctccatggctctaagttgctgcacgccagtcactaccattgattaaagccactaccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccatggctctaagttgctgcacgccagtcactaccattgattaaagccactaccttt 260
Query: 61 catttttaattttgtgtaaaagagagttgcaaccagtcttcatagcaggtcactgtggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttttaattttgtgtaaaagagagttgcaaccagtcttcatagcaggtcactgtggga 320
Query: 121 gctcaaaaagtgagaagccttatgtgaagacagaaactctcactctgggtgaaaattata 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 321 gctcaaaaagtgagaagccttatgtggagacagaaactctcactctgggtgaaaattaaa 380
Query: 181 tgcttaattaaaatgatcttccacagtggctgtaacactcatctttctgaaagggggtgt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttaattaaaatgatgttccacagtggctgtaacactcatctttctgaaagggggtgt 440
Query: 241 tgtgtatt-catcacctacagtgtgaaagctaaattctccagtctaaaattatttctatc 299
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtattccaacacctacagtgtgaaagctaaattctccagtctaaaattatttctatc 500
Query: 300 cagctgtagggatgatgtcaccttaaaaggagcccatggtgggatttgccatttgaataa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctgtagggatgatgtcaccttaaaaggagcccatggtgggatttgccatttgaataa 560
Query: 360 aatgtagtttaactcgaggcaggatgattcgattattcttttaattttatgctacacacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtagtttaactcgaggcaggatgattcgattattcttttaattttatgctacacacc 620
Query: 420 tgaataacacttattctgcttcataatgaagttgtcttaaaaataaaagcaaagagttat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaataacacttattctgcttcataatgaagttgtcttaaaaataaaagcaaagagttat 680
Query: 480 tgaccaaacccttgcatagcccccactgatgagatctcactagggtcagcaagggga 536
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaccaaactcttgcatagcccccactgatgagatctcactagggtcagcaagggga 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
