BAC Information

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BAC

Clone NameMSMg01-467O02
Chromosome3 (Build37)
Map Location 136,437,352 - 136,437,584
singlet/doubletsinglet
Overlap genePpp3ca
Upstream geneSlc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream geneLOC668870, LOC100039447, Emcn, EG229862, Ddit4l, LOC668874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467O02.T7 (MSMg01no467_o02.b1)MSMg01-467O02.TJ (MSMg01no467_o02.g1)
ACCAG551483AG551484
length739727
length of high quality
(start - end)
465 (44 - 508)233 (80 - 312)
definitionCHROMAT_FILE: MSMg01no467_o02.b1 PHD_FILE: MSMg01no467_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:52 2005CHROMAT_FILE: MSMg01no467_o02.g1 PHD_FILE: MSMg01no467_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGAATATCAAGGCACAACATACCCAAACTTATTGAATACAATGAA
AGTGGTGCTAAGAAAAAAGTTTATAGCACTAACTGCCTTCATAAGGCAAA
TAGAGAAATTTCATACTAGCAACTTAACAGCACACCTGGGAGCTCTATAA
CAAAGAGAAGTAATCATACCCAAGAAGAGTAGGTGGCAGTAAATAATCTA
ACTGAGAGCTGAAATAAATAAAACAGAAACAAAGAACAATGCACAAAGAT
CAATGAAACAAGGATTTTTTTTTTTTGAGAAAAATCAACAAAATAGAGAA
AACTTTATCCAAACTAAGAGGCAGAGAGAGAATAAACATATTAACAAAAT
GAGAAACAAAAAGGGAGACACAACAGACAATGAGGAAACCCAAAGAATAA
TTAGGTCATACTTCAAAAACTCATACCCCACAATAATGGAAAGTTTAAAA
GAAATGAATAGCTTTCTGACATATACCACTTTCCCAAGTTAAATCAAGAT
TATATAAACAATTTAAGTATACCTTTAGCCCCTAAAGGAATTAGAAGCTA
TACTTAACAATCTACTACCCCGCTAAGGATCCGCGGCCAGATGAGTTAAA
TGCATAAATTCCACCCCAACTTTCCTAGAAGTGCCTATTACCAACAACTC
CTTTTGTAATCGGGTAGCGCCTAATGGTTGTTCTTTATN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATCCTAATTTTCTTCATTA
CCAAGATGCACTCTGCCCTCCCCTTAACACTGGAGCTGAGTTTACAAGCA
AGAAAACCCCACAGAAGTGTTTGGGTGACCATTTTCCATGAAGAAAACCT
CTTGATTCTAGCACTGGCTTACTGCGCTCTGGCTTCTGGCACAGCGTGTT
ATTACAATCAGAAAAATGGAGAGACACTGGCTGTAAGACCAAACCTGATG
ATTGCATTTGTGTATTTTTTACACAGTTTCCTGCCAGCTAAGCAGCTGAG
TTCCATATACATAGATTTACATCCAAAGGAAGCCAGAATACTTGCAACAC
ACTTCCATTTTCAAATATGATACCATCTCGGAGGACAATTTCTTATGATG
CTATTATGGCCACATGAAGATATGTTAGCTCACGATTAACAACATGTTTT
GGACCTGAGCATTTGGTCCCCCCCCCAGTTTACTTCTTTTATGACCCTAA
TAGCCCAGTGTATATGGTTAAATTATCCCCTTCGTTAATTTCTCCCTCTT
CCATTTTACTCTACCCCCTTGATTTCCGATCCTTAAGCCATTTATTTTTT
AGATTCCTAACCCTGCCATTCTTCTTTTTTAGTTCCTTGCGCCTCATCCC
ATTTTTATCACCTCTCGCCTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_o02.g1 MSMg01no467_o02.g1 CHROMAT_FILE:
MSMg01no467_o02.g1 PHD_FILE: MSMg01no467_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:53 2005
         (233 letters)



>mm_chr3_136437152_136437784
          Length = 633

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatcctaattttcttcattaccaagatgcactctgccctccccttaacactggagctga 60
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 433 atatcctaattttcttcattagcaagatgcaccctgccctccccttaacactggagctga 374

                                                                       
Query: 61  gtttacaagcaagaaaaccccacagaagtgtttgggtgaccattttccatgaagaaaacc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 373 gtttacaagcaagaaaaccccacagaagtttttgggtgaccattttccatgaagaaaacc 314

                                                                       
Query: 121 tcttgattctagcactggcttactgcgctctggcttctggcacagcgtgttattacaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcttgattctagcactggcttactgcgctctggcttctggcacagcgtgttattacaatc 254

                                                                
Query: 181 agaaaaatggagagacactggctgtaagaccaaacctgatgattgcatttgtg 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggaaaaatggagagacactggctgtaagaccaaacctgatgattgcatttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)