BAC Information

Click to search

BAC

Clone NameMSMg01-467P01
Chromosome3 (Build37)
Map Location 100,954,444 - 100,954,749
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
Downstream geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467P01.T7 (MSMg01no467_p01.b1)MSMg01-467P01.TJ (MSMg01no467_p01.g1)
ACCAG551528AG551529
length764810
length of high quality
(start - end)
310 (45 - 354)53 (124 - 176)
definitionCHROMAT_FILE: MSMg01no467_p01.b1 PHD_FILE: MSMg01no467_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:57 2005CHROMAT_FILE: MSMg01no467_p01.g1 PHD_FILE: MSMg01no467_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCTCTTTCCCAAAAGCCTAATGTTAATACAGGGGGAAGTTGTTC
CTTTTGGATTGCCCCAGTTTCCCCCAAATGAGCCTATTTGGGCCCTAAGA
ACAAAGACTGAAGTAAACATAATAGCACCGTATCCTAGGTGCATTGGATA
GAGGAGCGCTCATACCCCATCGCTGGTGAGAACCTAGCCCATTCTGTATG
AAGACTATGAGGCTTGAGACCTTCAGACCCACATTCTCTGAGTTTTAGCC
AGAAGCCTGTCTGCTATTTCTCTCATTAGATCTCCGCGTGCCAGCGTGGC
TTAGGAAGAATAGTCCAGCTGGCATAGACCCTCCAAAGCTCTGGAAAAAT
GACTGAATCCTTCCAAACAGTCTTAACAGTTAGTCCATTTTAAACATTCC
ATCAAGTTCAAAGTCTGTTCTACCTGGCTGTGTGCAAGTCTATTTTACGC
TGTCTAGTTCTTTTCATCTCCCACCAATTTTGTGCGTGCGTGCGTGTCCG
TGTGTCCCTCTTTCCCTCCCTTTCTATCTTTCTTATCCTCTTCTTTTCTC
TTTTCTTCCTTTCTTTTTCATTTTCTTTCTATCTTCCCTTTTTTCCTCTC
TTACGACTTCCCCTTCTTTCTCTTTCTCCTCTTCTTTTTCTTCGCCTCCT
TTCTCCTTTTACTCTCCTCCCTCTCTTACTTTTCTATCCCCCCTTCTTCC
CCTTATATCTCTCT
ATGAAGTGTGAGGCCTGGNGGACGCCTGGGTGGTCATTTGCNGTGAACTA
TACAAGTTGCATCACCCCCAGATCCTTATATTGCTGAACTAGTCAGGGTT
CTCTAGAGGTATAAAACGAATACAATATATGTATGTGTGTATATGTGTGT
GTGTGTGTGTGTGTATGTATATATATATACACATATATATTATTTATTAC
TATGTTATACATACCACCCACACTCTACTCCCTACACATATTTTTTTTTT
CCCACACCCTCCCCCCTCCCTCTTCCCTACTTCCCTTCCCACCTCCACCC
CCCTCCCTTTCGATACATTCACACCCCCCCCCCCCCCCCCCCCCACCCTA
CTTTTTTCCCCCCCCCCCCTTCTCCCACTTCGCTCCTCCTCTCTCCCCTC
CCCCCCCACACTTCCTCCCTCCCCCTCCCTTCCCCTCCTTCTCCTTTCCC
CCCCCTTCCCCTTCCCCTATCCCTCCCTTCTCCACCCCCCCCCTTCTCCT
TCCCCCCCTCTCCTCTCTTCCTCCCTCTCTTTCCCCTTCTCCCCTCCCTC
CCCTCACCCCTTCTTCTCCCCTTTTCCCCCCACTCCCTCTTTCCTTCTCC
CTCCTTCCCCCCTTTTTCCTCCCACTTCTCCCCCCTCCTCCGCCCTTCTT
TTTCCTTTCTCCCTCCCCCTCCTCCCCCTCCTCCTCCTCTCCACCTCCCC
CCCCCCCCCTCTTTCTTCTTTTTTCTCCTTCCACCTCCCCCCCCCTCCTA
TCTCTTTTCTTCTCCCTACCCTCCCCTTCCTCCCTCTTCCCTCTCTCCCC
TCCTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_p01.b1 MSMg01no467_p01.b1 CHROMAT_FILE:
MSMg01no467_p01.b1 PHD_FILE: MSMg01no467_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:57 2005
         (310 letters)



>mm_chr3_100954240_100954949
          Length = 710

 Score =  530 bits (274), Expect = e-155
 Identities = 298/306 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacctctttcccaaaagcctaatgttaatacagggggaagttgttccttttgga 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacctcatacccaaaagcctaatgttaatacagggggaagttgttccttttgga 264

                                                                       
Query: 65  ttgccccagtttcccccaaatgagcctatttgggccctaagaacaaagactgaagtaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgccccagtttcccccaaatgagcctatttgggccctaagaacaaagactgaagtaaac 324

                                                                       
Query: 125 ataatagcaccgtatcctaggtgcattggatagaggagcgctcataccccatcgctggtg 184
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 325 ataatagcaccgtatcctaggtgcattggatagagaagggctcataccccatcgctggtg 384

                                                                       
Query: 185 agaacctagcccattctgtatgaagactatgaggcttgagaccttcagacccacattctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaacctagcccattctgtatgaagactatgaggcttgagaccttcagacccacattctc 444

                                                                       
Query: 245 tgagttttagccagaagcctgtctgctatttctctcattagatctccgcgtgccagcgtg 304
           |||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||
Sbjct: 445 tgagttttagccagaagcctgtctgcaaagcctctcattagatctccgcgtgccagcgtg 504

                 
Query: 305 gcttag 310
           ||||||
Sbjct: 505 gcttag 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)