BAC Information

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BAC

Clone NameMSMg01-467P17
Chromosome3 (Build37)
Map Location 136,045,785 - 136,046,381
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream genePpp3ca, LOC668870, LOC100039447, Emcn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467P17.T7 (MSMg01no467_p17.b1)MSMg01-467P17.TJ (MSMg01no467_p17.g1)
ACCAG551560AG551561
length7471,545
length of high quality
(start - end)		596 (36 - 631)---
definitionCHROMAT_FILE: MSMg01no467_p17.b1 PHD_FILE: MSMg01no467_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:00 2005CHROMAT_FILE: MSMg01no467_p17.g1 PHD_FILE: MSMg01no467_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCCA
AATTTATCCTCCATCTCACAGGCTGCTTCCTTAGGACTGTATCATGGATT
CTATAGCAACATTAACATGACAGTGAGATGAAAAGATGGTTTATCTTTCC
TTTTAAAAGATAGACACTATAAATATTTGTCTCTCCCTACCCTCCCTCCT
TGAAGAACTAAATGTGTAGTTACGGTGTGAGAGAATGCAGCCCTGATTTG
CATTTGCTCTGATTTCTTAAGCTGCACTGAGGTGAGTAATGTTCTGTTCC
TGCTCCTGATACATCAGGACCACTTGCTAGGCAATCACCAGCCTCAGATG
TAATTGTTTATTGACCATGACCTGTGAGCTGATACAACCACAGAAATGCA
TGCCAGTGTCTGGCAAAAAGTGCCTTCGTTGTTTTTAACATTTTTTTAAA
TGTTCTCTTCATAAGGATTATATGCTAATTGTACAAAGCACTGGGTCTCA
TTATGCCTTTTATAATATATTTCAATCATATTCACCCTGGTCTGTAGATG
TTTTAATCGTCCTTGCCTTCATTTTCTGATATGCCCCAACCCTGCATTCT
GGTATTTCATCTTTATGTAACATACATTCAGAAGGATTTGGCTTTGGCAC
TGTACTGAGCACCAACTAGAAAATTCTACCTAAAAAAAGATAATTTGGCC
TGTATCCTTGTAAAGCTGAAGATGGACTGGGTAATGGAAACATGATN

CGCTCTGTACTACCATGGCCNCCANANAGTATTATGTGATGTGTATACCT
ACTCATGAGAGTGGGTCGGCGGCGTAGTGTGTCGACTGCACACTCTGCCT
CTGTATATATAAATAGCGAGGAGTGGTGCGCGCGGCGACGACACGCGCTG
AGCGCCGTANCACCATGGCACTAATCATACGCNGGATGATAGACGTATGC
ACAATGACGCGGCACACCGTANTATATCGCGCCTATTTATAGATACTGCG
CTGTTTAGGCTAGCGTTGCTTAACAGTACTTGCGTAGTTAATATGACGCT
GTGATTAGTGTGCNTCGCTGCCACGCATGCCGTATGGTGCGCGGTACTGA
ACGCACGTGTAGATGTTATATCTAGTCTGATCGACTATACAGATTTACGC
ATGGTGCAGNGTAGATGTGAGATGGTCGGCGGCCGCGCGACTATGTCTGA
CACTGTATGTATCGCCTCTTATTGTCGACCGTATCCCTATCCTTGCACGA
GCTATGTGATAGAGACNATGCGATTGACGCGCATAACTTGTCCGCTATGA
GATAGTCAGATGTGTTATTGAGCTCAAGTGCTGTGAGCGCGGTTGTGATA
TCTCGCCNTATCACNTNGTCTAGTAGTGTTGATCGCGATGTTGAGTATCT
CTCATCGCAGCTATCTNCACGCGTGGACTACCTCCTCGGTCGCCTTGAGT
GTTAGTAGTGCCCTCCTGCCGCTCGTTATATGATGCTGACGTATTCTCTC
GTATGCCGTCTCTCGTCTTCTCCACCTACTATACCACATCTACTCTATGC
CGCTACTATTCGCCGCGACGNGTCTATCCTCGTCGTTGTTCGTCACGTTC
GATGAGTCGCCGCCGCTGCTGGGATCGACTAGCTATTAGATAGCGAAGCA
GCACGCAGATCACGCAGCTCGACTGAAAGCTTATAAGTTATCGACGACAG
CTCCTATTCGCTGCATGTTTTCACGCTGTGTCTGTCAATACCGAGCTAGG
TCATCTATGCGGCCAACTGCGTATATCGGCCTACTACGCCTCGTACATCG
AACCGTCGCGTGTTAAATCGCGGTAATTGCGATATTACGCGTCTCTAAAT
CCGTCCCTCTGCTTAATTCTGCGCGCGCGAATGTCTCGTAGCCGCTGATA
ATTACAGGCGCGCAGACACACCGATGGACCGCTCGTCCGTGAATCTGATC
AGCATGCGTTCTATTATGCGGTGCAATCATATGCTGGCAGGATGATACGT
GACGACTGCGGAGTAATGGTTATGTTCGTTTATCTGCCAATGATCCACGC
GTGTACGTTAACGTTTCCTCACCCTCAGCTGGTTAATCACGACATCGTGT
CTATCGTCGCCGCGCGTGACTAGCACGCGCGACATCATGTGCGTATCTAT
TACATCTTAGACGCGCCGACGTCAGGACCGGCATCACTGTGATATAATAT
CTTATCGAGANGGTGAGTCCCCCGTGCAGAATAGTAATCAGTACATCATA
ATGTGCGCGATGTTCCTACGCGCGCAGTGTCACGCCGACTAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_p17.b1 MSMg01no467_p17.b1 CHROMAT_FILE:
MSMg01no467_p17.b1 PHD_FILE: MSMg01no467_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:00 2005
         (596 letters)



>mm_chr3_136045692_136046686
          Length = 995

 Score =  953 bits (493), Expect = 0.0
 Identities = 570/605 (94%), Gaps = 21/605 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccaaatttatcctccatctcacaggctgcttccttaggactgtatcatggat 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 690 gaattcacccaaatttaacctccatctcacaggctgcttccttaggactgtaccatggat 631

                                                                       
Query: 65  tctatagcaacattaacatgacagtgagatgaaaagatggtttatctttccttttaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctatagcaacattaacatgacagtgagatgaaaagatggtttatctttccttttaaaag 571

                                                                       
Query: 125 atagacactataaatatttgtctctccctaccctccctccttgaagaactaaatgtgtag 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 570 atagacagtataaatatttgtctctccctaccctccctccttgaagaactaaatgtgtaa 511

                                                                       
Query: 185 ttacggtgtgagagaatgcagccctgatttgcatttgctctgatttcttaagctgcactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttacggtgtgagagaatgcagccctgatttgcatttgctctgatttcttaagctgcactg 451

                                                                       
Query: 245 aggtgagtaatgttctgttcctgctcctga--tacatcaggaccacttgctaggcaatca 302
           ||||||||||||||||||||||||||||||  ||    |||||||||||||| |||||||
Sbjct: 450 aggtgagtaatgttctgttcctgctcctgatgta----aggaccacttgctaagcaatca 395

                                                                       
Query: 303 ccagcctcagatgtaattgtttattgaccatgacctgtgagctgatacaaccacagaaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccagcctcagatgtaattgtttattgaccatgacctgtgagctgatacaaccacagaaat 335

                                                                       
Query: 363 gcatgccagtgtctggcaaaaagtgccttcgttgtttttaacatttttt-taaatgttct 421
           ||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| ||
Sbjct: 334 gcatgccagtgtctggcaaaaagtgcctttgttgtttttaacattttttaaaaatgtcct 275

                                                                       
Query: 422 cttcataaggattatatgctaattgtacaaagcactgggtctcattatgccttttataat 481
           |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 cttcataaggattatatgctgattgtacaaagcaccgggtctcattatgccttttataat 215

                                                                       
Query: 482 atatttcaat---c-------atattcaccctggtctgtagatgttttaatcgtccttgc 531
           ||| ||||||   |       ||||  |  |||||||| |||||||||||||||||||||
Sbjct: 214 atacttcaatatacttttataatat--a--ctggtctgaagatgttttaatcgtccttgc 159

                                                                       
Query: 532 cttcattttctgatatgccccaaccctgcattctggtatttcatctttatgtaacataca 591
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 158 cttcattttctgatatgccccacccctgcattctagtatttcatctttatgtaacataca 99

                
Query: 592 ttcag 596
           |||||
Sbjct: 98  ttcag 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space:   577210
Effective search space used:   577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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