BAC Information

Click to search

BAC

Clone NameMSMg01-468C14
Chromosome3 (Build37)
Map Location 8,855,680 - 8,855,910
singlet/doubletsinglet
Overlap geneMrps28
Upstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504
Downstream geneTpd52, LOC100041389, LOC667886, Zbtb10, Zfp704, Pag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C14.T7 (MSMg01no468_c14.b1)MSMg01-468C14.TJ (MSMg01no468_c14.g1)
ACCAG551698AG551699
length780811
length of high quality
(start - end)
231 (333 - 563)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no468_c14.b1 PHD_FILE: MSMg01no468_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:16 2005CHROMAT_FILE: MSMg01no468_c14.g1 PHD_FILE: MSMg01no468_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTCGAGAACTCCGCGG
AATCACAACTGGATACCAAGAGAGCAGGAAGTGAAGACAGTGAGCCAGTA
GGCCCAGCTTGAGCCTCTGATACCTCAAAGCCCACCTTTTAGTGATGCAC
TTCCTCCAACCAGACCAGACCTACTAATAGTGCCCCTTCCTATGGACATA
TACAGACCATTCTACTCAACATCCTACAAAGGGGGGCTTCTCTGACCAAG
CCTGGGAGCACTTCTCCATGATCTAAGCAGACACGTAGATGGCAGTGTGT
TCTGACGGTATGCTAGCTTAGTCTTGTATTTCAGTAAGTGCTCTACTTGG
GCCTGGCACACTTGCAGGCATGGGATGCTGGTTAGGCTTTGAGTAGCAAG
CAGGGCAAGCAGACGCTTCTTACTGTGGGACAGTCCTCATAACAATAAAT
GGTGGACCAGCTGCCTCTACAGCAACTGGGTACATCGGACCCAGCAAGCT
GGTTTTTGAGTTCAGTTTAGAGCTAGGGAAGACCACTTGAAGCCCCCTGC
CCCAACAGCCTAGTTTGCCAGCAAGTGGGAAGGATGTTTCCAGTTTACCT
AGTCTGCTCTCTCTGGATCTTGAAACCAGGGTGTGTGCTGTCCTCAGCAA
TAGGGCCCTTACCTTTCAGTTTCTGTTGAGCCACCCAAGAGGAATGACCT
AAGTCTTGTATAGTTGTGGGGGCCTTCTGAAGCCTCCCCCACCAATCCTC
GCCGGGCTTTTCCTGCCCGGCCCTGGTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCCTAATAAAAAATGGAAAAAAAAAAGT
CTAGAATTATTGTTATTCAGGATTTTTTTTTTGTCTTTTTCTGGTGTTTT
GAGATGTGGTCTTGCTATATAGCCCAGGTTGGCCTTGAACTTGAGGCGAT
TCTTTGACCTCAGTTTCTCTCTCTCTCTCTTTCTTTTTTTTTGTGAGAAA
AGATACATTTTTTTAATTTATCTGAATTTGTTAACATTTTAAAACATATT
TTGAGTAAATAGACTTACATCACATTCTCCTTCTTTTTTTTTTTTAAAGA
TTTATTTATTATTATATCTAACCACACTGAAGTTGTCTTCAGATGCACCA
GAAGATGGTGCCAGATCTCATCACTTATGGTTGTGAGTCACCCTGTGGCT
GCTGGCACCTGATCTCATCATTTTCGTACGAGCTGCTTGTGATCTTAACC
CCTGATTCTATCTCTTCGTCCCCTATCCCATTTCTTCACCCCTTCCGAAC
CCCATATCTTCCCTTACAGTTTTCCCTTCCATCCTGTTATAACCTCTCCA
TTATTTACCCTATCTCTTTCCATTCTTCCGATTTCTTTGCACTCAGCAAC
ATTTCGATCTCCTTCCCCACCTTATGACTTCTTCTTTTTCTTCTCCCTCT
CAATATTTCTCCGCTATCCCGCATTATTTTCCTATCCTCATTATCCTCCT
ACCTTTATTTTTTTAATTCTATTATATTTCTTCCCTTCTCTCCTTTCTTC
CCATCCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c14.b1 MSMg01no468_c14.b1 CHROMAT_FILE:
MSMg01no468_c14.b1 PHD_FILE: MSMg01no468_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:16 2005
         (231 letters)



>mm_chr3_8855480_8856110
          Length = 631

 Score =  447 bits (231), Expect = e-130
 Identities = 231/231 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaagtgctctacttgggcctggcacacttgcaggcatgggatgctggttaggctttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaagtgctctacttgggcctggcacacttgcaggcatgggatgctggttaggctttga 260

                                                                       
Query: 61  gtagcaagcagggcaagcagacgcttcttactgtgggacagtcctcataacaataaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagcaagcagggcaagcagacgcttcttactgtgggacagtcctcataacaataaatgg 320

                                                                       
Query: 121 tggaccagctgcctctacagcaactgggtacatcggacccagcaagctggtttttgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaccagctgcctctacagcaactgggtacatcggacccagcaagctggtttttgagtt 380

                                                              
Query: 181 cagtttagagctagggaagaccacttgaagccccctgccccaacagcctag 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtttagagctagggaagaccacttgaagccccctgccccaacagcctag 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)