BAC Information

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BAC

Clone NameMSMg01-468D14
Chromosome3 (Build37)
Map Location 29,117,311 - 29,117,712
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468D14.T7 (MSMg01no468_d14.b1)MSMg01-468D14.TJ (MSMg01no468_d14.g1)
ACCAG551746AG551747
length785756
length of high quality
(start - end)
529 (44 - 572)45 (98 - 142)
definitionCHROMAT_FILE: MSMg01no468_d14.b1 PHD_FILE: MSMg01no468_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:21 2005CHROMAT_FILE: MSMg01no468_d14.g1 PHD_FILE: MSMg01no468_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCTTCACTGTTTACCCACCATTCATCCTAGAACTCTTTTCCTGGGAG
ACTTTCTCAGTGCTTAGCTCTGTGTTTTCAGCTCAAGAGTCTTAGGTTTT
GCCTGGTTTACCTTTCCAAGGTATGGTCTGCAAAATTTTGGAAATGTGAA
CTGGGACAGTAAAAGTCAAGATCCCATGTTTCCTGTCTCTCATGAGCCTG
AATTCATGGCCTGATGCCTCAGATCTTGAAAACTATTACATATATATTTA
ATCAATTTTGGGATAGTGGTTTTTATGTAGAATATTAAGCCCAATTTATG
CTATTCTATTATGAAAAGAACTTGCATCATAGTAATTCACGCTTTTAATG
TTTTAATATGCATATTTTCCTCAAAGTAGACTTATCTATTATCTATTCTT
ATTTGGCATATTGAGAAGCTGATAGGATTTTAATTTTGGCAGATAAAATC
AAGTGAGAAAGGCCAACATTGAGCTTGATAATGTAATATTAGAGAANACA
CTAAGTTCATATGGAGCTAAAGATTAGCTGTAAAATAGTGTCTTCTAGAC
ATAGCATAGCCACTGCACTCCTGAATTCAGAGAAGTTGTGGATGCTCACA
TTAACCCTGTAGAAAACAAAGTAGTCCACATCCCCCCATTAATGGATTAT
GAGCTCTTAAGGTCCTTATCTCAATCTTGAACAGCTATTGTTTGTTTGTG
GCCTATTTATGAAAGATAATTATCTTTTTCCTTCN
AAAAAAAATNNNNTTCCATTAATTTTCCGATCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAATTCTT
TGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAG
TCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCGA
TTTGGGATAGGGAAAGATCCTTTCCCAATCTGTTGGGGGGCCTTTTTGGC
TCTAATGACGCCGGCCCTTTTGCTTTTCACAAACTTTTTCTATTTTTTTT
GAGGGCCCCCCTTTATCCGCATTCTGGAAAACAAACATTTTTTTTAAAAA
ACAATATTGGTGCCCTTTGTTTTTTTTTGTAAAAACACTCTTTTACTACC
CCCCCTCTCTCATGAAAATGGGTTTTTTTTATCACTTTTTTTGTGTTCAT
AAAATCTTTCTTTCCCCTACTCCTTCCTTCTTCTCTTCTTCCCCCTAATT
TTCCTCTCCCTTCCGTTTCTAATCCCGTTGTGTTTCATCTCCTCTCTACC
CTCCCCCTTGTCTGGACATTTCCTCTCCCTTCTAATATAATTATACTCCC
TCTTCTTTCCTAAACTACATCTCCCATTTTCCGTTATATTATCTTCTCTC
ATCCATCCATCTCGGTTTCCCTTCTTCCTTCCACCCCCCTCCCTTCTAAT
AACTCTCTCCTTCTACCAGCTCCCCTTTCTTCTGTCCTAGCAATTACTTT
ATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_d14.b1 MSMg01no468_d14.b1 CHROMAT_FILE:
MSMg01no468_d14.b1 PHD_FILE: MSMg01no468_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:21 2005
         (529 letters)



>mm_chr3_29116784_29117712
          Length = 929

 Score =  741 bits (383), Expect = 0.0
 Identities = 397/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 128 gtatggtctgcaaaattttggaaatgtgaactgggacagtaaaagtcaagatcccatgtt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gtatggtctgcaaaattttggaaatgtgaactgggacagtaaaagtcaagatcccatgtt 870

                                                                       
Query: 188 tcctgtctctcatgagcctgaattcatggcctgatgcctcagatcttgaaaactattaca 247
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 869 tcctgtctctcatgagcctgaattcatggcctgatgcctcagatcttaaaaactattaca 810

                                                                       
Query: 248 tatatatttaatcaattttgggatagtggtttttatgtagaatattaagcccaatttatg 307
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 809 tatatatttaatcaattttgggatagtggtttttatgcagaatattaagcccaatttatg 750

                                                                       
Query: 308 ctattctattatgaaaagaacttgcatcatagtaattcacgcttttaatgttttaatatg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctattctattatgaaaagaacttgcatcatagtaattcacgcttttaatgttttaatatg 690

                                                                       
Query: 368 catattttcctcaaagtagacttatctattatctattcttatttggcatattgagaagct 427
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 689 catattttcctcaaagtagacttatctattatctattcttatttggcgtattgagaagct 630

                                                                       
Query: 428 gataggattttaattttggcagataaaatcaagtgagaaaggccaacattgagcttgata 487
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gataggattttaattctggcagataaaatcaagtgagaaaggccaacattgagcttgata 570

                                                     
Query: 488 atgtaatattagagaanacactaagttcatatggagctaaag 529
           |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 569 atgtaatattagagaaaacactaagttcatatggagctaaag 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)