BAC Information

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BAC

Clone NameMSMg01-468O22
Chromosome3 (Build37)
Map Location 6,598,061 - 6,598,285
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
Downstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468O22.T7 (MSMg01no468_o22.b1)MSMg01-468O22.TJ (MSMg01no468_o22.g1)
ACCAG552288AG552289
length916783
length of high quality
(start - end)
229 (75 - 303)399 (81 - 479)
definitionCHROMAT_FILE: MSMg01no468_o22.b1 PHD_FILE: MSMg01no468_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:20 2005CHROMAT_FILE: MSMg01no468_o22.g1 PHD_FILE: MSMg01no468_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGGCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATGTCTTTCCGAATATTTCTAGGGTCTTCTCATAGTGT
TCCAAGTAGAACACACAATTAGTGTAAATTTTATTCTATCATTATTTTAC
CCTCTGATTTCCAATTAGGAACTAGTTCCAGATGTGAAAATAGAAAATAT
TGTTTTAGGGTTGGTGATAATGACAGGTATTCTCATGTTCTGTTAATTTT
TGTTGATGTTTTTATAGATATGCACTTATCATAGTTTATGTGCACGTTAT
TTTATTTATTTTTGGTTTTTGTGCTCATTTTTTTTTTTTTTCATTTTTCT
GCTTCCTTTTCCCGTGAGTTTTTATTCCCTCTCTTTCTTTTGTTCTTGAT
AGTTTTTTCGAATGTTTTTAGTATTTGTTTCCCCACCACACTACAATAAT
TTACTCTTTTTTTTTTTTTTTTTGTCTTATTTCTCTAATTTTGTCCTTGT
ATTTTTCTCTTCCTCTCATTCTCTTAACTTTTTTTTTATACCCTATCTTA
CTCCTCTTACTTTCTCTTCTACCTCATTCTTCTTCCCCACTTTCATAATC
TATTCTTTCCTATTTATCTACCACCCCTCTTTCTCCACGTTCTTTAATCT
TGCGCATTTTATTTCCTCTTTTACTTCTATCTCTTTCACTATTTCCGCTT
TCTATGTATCCATCACTCTTCTCTTATCTTCTTCTTCTGCTTTTTCATTC
TACTGCTATTTTCTATCGTATCTTTGCTCTTGCATCATACTACATTCTCT
TAGCCTATTATTCTGTTCCCTCTTTCCTTTATATTCTTTTCCCCTTCTCT
TCCCCTCCCCCCCTCTGTCACCTCTCTCACTCTTTTCAATTAGACTCACC
TCCTTCTCTTATCTTN
NNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGATACT
GAAACTTATAGAGAAGATAGTAGGGAAGAGCCTTGAAGATATGGGCACAG
GGGAAAAATTACTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCAAGA
ATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGAAAAAGA
CACCATCAATAAGACAAAAAGGCCACCAATAGGTTGGGAAAATATCTTTA
CCAATTCCCAATCGAATAGGAGACTTATATCCAATATATACAAAGAATTC
AAGAATGTGGACTCCAGAAAACCAAATAATTCTATTAAAAAATGGTGTAT
GGAGTTAAACAAAGAATTCTCAACTGAGAAATCCTGAATGGCTGAGAAGC
ACCTAAAACAATGTTCAATATCCTTAATCACCAGGGAAATGCAAATCATA
AACAATCCTGAGATTCCACCTTACACCAGTCCGAATGGCTAAGATCAAAA
ACTCCCGTGGACCCCGAAGCTACAAGGATCAAAACTCCGGGGACACCTTT
GTTGAAGAGGATATGGAGAAAGAAGAACCCTCCCCCTTTCTGGTGGGTGT
GCATATGTTACCCCCCCCCGGTATCATTTTTTACTTCGGCTGGCATCTTT
ATTAATTCTTACTTCCCCTCCCTCTTTTTTCCTCATACATGCGTCCACCC
GGGTTTATCTACCCCTTCCCCTTCTTAACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_o22.b1 MSMg01no468_o22.b1 CHROMAT_FILE:
MSMg01no468_o22.b1 PHD_FILE: MSMg01no468_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:20 2005
         (229 letters)



>mm_chr3_6597861_6598485
          Length = 625

 Score =  408 bits (211), Expect = e-118
 Identities = 223/229 (97%), Gaps = 4/229 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttctagggtcttctcatagtgttccaagtagaacacacaattagtgtaaattttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atatttctagggtcttctcatagtgttccaagtagaacacacaattagtgtaaattttat 366

                                                                       
Query: 61  tctatcattattttaccctctgatttccaattaggaactagttccagatgtgaaaataga 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 tctatcattattttaccctctgatttccaattaggaaatagttccagatgtgaaaataga 306

                                                                       
Query: 121 aaatattgttttagggttggtgataatgacaggtattctcatgttctgttaatttttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaatattgttttagggttggtgataatgacaggtattctcatgttctgttaatttttgtt 246

                                                            
Query: 181 gatgtttttatagatatgcacttatcatagtttatgtgcacgttatttt 229
           |||||||||||||||||||||||    |||||||||||||| |||||||
Sbjct: 245 gatgtttttatagatatgcactt----tagtttatgtgcacattatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 625
Length adjustment: 9
Effective length of query: 220
Effective length of database: 616
Effective search space:   135520
Effective search space used:   135520
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)