Query= MSMg01no469_a10.b1 MSMg01no469_a10.b1 CHROMAT_FILE:
MSMg01no469_a10.b1 PHD_FILE: MSMg01no469_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:27 2005
(664 letters)
>mm_chr3_42937629_42938692
Length = 1064
Score = 1151 bits (595), Expect = 0.0
Identities = 649/669 (97%), Gaps = 6/669 (0%)
Strand = Plus / Plus
Query: 1 agaaaaagacaactattatttttaatcatttggataattatgtaaaattcttttaatgat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agaaaaagacaactattatttttaatcatttggataattatgtaaaatgcttttaatgat 260
Query: 61 atttatagttatttgttaagttagcacttcacactcatacaatatatgaaattttacaaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatagttatctgttaagttagcacttcacactcatacaatatatgaaattttacaaa 320
Query: 121 tcaataatacagatactgccccacatggggatccatcccataaacaaccaccaaacccaa 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaataatccagatactgccccacatggggatccatcccataaacaaccaccaaacccag 380
Query: 181 acacgattgcatttgaaatgtaaatgaaggcaatatataataaaaattttgaaaaaattc 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 acacgattgcatttgaaatgtaaatgaagacaatatataataaaaattttgaaaaaattc 440
Query: 241 cctcattatttaaatatgtacttttatacaggcaagaatttaaaac--gagtgaatatta 298
||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 cctcaagagtgaaatatgtacttttatacaggcaagaatttaaaacatgagtgaatatta 500
Query: 299 attagaggctctactatccagagcaaatcatttacattaaggtatttcttgaacagggca 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attagaggatctactatccagagcaaatcatttacattaaggtatttcttgaacagggca 560
Query: 359 tgtggctgagtttaaactagtatctagagctcacagaattcctttcccaactacaacatc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggctgagtttaaactagtatctagagctcacagaattcctttcccaactacaacatc 620
Query: 419 tattatgattggattgtgctgaagttgtcatttatgttattctaagaacttctagcacct 478
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 tattatgattggattatgctgaagttgtcctttatgttattctaagaacttctagcacct 680
Query: 479 gttccttcccttccatccacttacaaactaaaactgtagacagtaatgatatccttttta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttccttcccttccatccacttacaaactaaaactgtagacagtaatgatatccttttta 740
Query: 539 ttctaggagggaaa---tttttttttccagataagtccatgattctacacttttgaatta 595
|||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 741 ttctaggaaggaaacaatttttttttc-agataagtctatgattctacacttttgaatta 799
Query: 596 acgactgacagaagacgtaaaatttacttataaatttgagatgtaattatttcctaaaat 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acgactgacagaagacgtaaaatttacttataaatttgagatgtaattatttcctaaaat 859
Query: 656 ataatcaaa 664
|||||||||
Sbjct: 860 ataatcaaa 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_a10.g1 MSMg01no469_a10.g1 CHROMAT_FILE:
MSMg01no469_a10.g1 PHD_FILE: MSMg01no469_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:27 2005
(529 letters)
>mm_chr3_43111606_43112534
Length = 929
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%)
Strand = Plus / Minus
Query: 1 cccaatttaagacaatgtagctttttcataagtgccaaagcatcccagaaaatggcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cccaatttaagacaatgtagctttttcataagtgccaaagcatcccagaaaatggcaatc 426
Query: 61 ctaaaacaagaccttcttttgtctcaactataaacttgacatatataactaagctcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctaaaacaagaccttcttttgtctcaactataaacttgacatatataactaagctcagaa 366
Query: 121 ttgatttcaaattttcactggtattgtggaaactaatgtcaatgagatgtgatgttcatg 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 ttgatttcaaattttcactggtattgtggaaactaatatcaatgagatgtgatgttcatg 306
Query: 181 aatctcagtggtacctcaaggtaaaattactgaagacctacaaatttcagtaaaatgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatctcagtggtacctcaaggtaaaattactgaagacctacaaatttcagtaaaatgatg 246
Query: 241 aaccaattgcagattaacataagttatatattatttttgccatgctataaattaaaataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaccaattgcagattaacataagttatatattatttttgccatgctataaattaaaataa 186
Query: 301 actatataattttataaaaccacagatactaaagtagattttattgttcatttgataatc 360
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 185 actatataattttataaaaccacagatactatagtagattttattgtttatttgataatc 126
Query: 361 aagtcactgcaatgttttatgctacatagctcataagaaaatggtcattattaaagggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aagtcactgcaatgttttatgctacatagctcataagaaaatggtcattattaaagggaa 66
Query: 421 ttgagatttacctatcaggatttctatgtatgcttgatttcaacagttcaaacgaatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ttgagatttacctatcaggatttctatgtatgcttgatttcaacagttcaaacgaatact 6
Query: 481 ggatt 485
|||||
Sbjct: 5 ggatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
