BAC Information

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BAC

Clone NameMSMg01-469A20
Chromosome3 (Build37)
Map Location 97,605,449 - 97,741,812
singlet/doubletdoublet
Overlap genePde4dip, Sec22b, EG433632
Upstream geneCd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2
Downstream geneLOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469A20.T7 (MSMg01no469_a20.b1)MSMg01-469A20.TJ (MSMg01no469_a20.g1)
ACCAG552380AG552381
length788795
length of high quality
(start - end)		569 (43 - 611)452 (74 - 525)
definitionCHROMAT_FILE: MSMg01no469_a20.b1 PHD_FILE: MSMg01no469_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:29 2005CHROMAT_FILE: MSMg01no469_a20.g1 PHD_FILE: MSMg01no469_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,741,362 - 97,741,812)(97,605,449 - 97,605,900)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGTATTCCAAGAAGTCAGAAATTAAAGATGTCATACAGTGTGGCACC
ATTTACATACAATGTCAGAACAGGCGAATGGAGCCAAAACAGCAAAGCAG
ATGGTCTAAGATTAAGGAGAGCACAGGGCTGGGGCCAGGCATGGGGAATA
ATGAGTCACCATGGCGAATGAAGGTTTCTCTTTAGTATGAAGAGAATGTC
TAATGTTACTTAGAGTGATGGAGGGAATGTTCTACAACCTACTGAAAACG
GAACTGTAGACTTCAAACTTGTCGCTTTGTAGTCCATAAATCACCTCTCA
ATAAAGATGTGTTTAGAGAGCAGCTTCGTTTTCACTGTTGAAAAGAGACA
TTGGATTGTGTGGTTCACTGCCCTCAAGAAATTCGTTCATGTAATGCATG
AAGGAGCAGACTATGGAATTGGCCTAAGGGGTTGCTGGTGATAAAAGCTG
AGGGGGAGAAGGGCCAGAGAGAGGAGGGCAACATGGCACAGGAAGGACAC
TGGAAATAAGGGCTGGTCAGAGAGATGCTCCCAGAAATGAAGTAGCAAAT
TATCTCAGGGCCGGTAACCTATGTGAGAAGCAGGAGGAGATGGGGGTAGA
GTCTTCCGACTTCTTCTTAGTGAGCATTTGGGTGTCGGTAAACGACAATG
TTGTCTTGTACAATTATGTATACAAGCCTGCTTCTTCTCCTTTCAGTTTA
CCCGTTATATCCGGTAATATTATCCGTCCATTACCATN

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGTGACTCCTGACCTCATGCTCCAAAG
AGACACCACTAACCCACAGACAACGTATTACACTCGGCTGCTCTCCCTCC
CAGCTCTAGTTTGGGATATAAATATGAACTGCAGCACCATCAAAGGAAGG
TAAGACTCCAGTGCTGAGGCAGGGGCATGGAAAAGATGGCTATCAGCTGG
GGTGTAAATTCCGACTCTTACACCGTCTACTATACTGAAAGACAGAAAAA
TGCAGATTCAGCCATTTTTCAGAGCTAGCTCATCTTCTGTCTTCTAGAGA
TCATCACTTCAGGGACTTTAGTACAGTTCCTTTAGGTTTTAATTTCAGGT
ATGCCCAACTAAATAAGATGAAATGAGAATATTGGCATATTGAAAGTATT
CAATAATGTAATTTCACACAGTAATCAGAGGCATGAACCACAGGGAAATA
GCCGATTCTGACCAACACCCAGTTTGGGAATTCAATTTAAAAAGAATTAA
ATGAGGTGTGCTTGGAATTTGATGTTAGAGGAAGCTATTTATGTAGGGGG
ATATATATCTCTACCTATACCTATCTCTATTCCTATTAATATCGCATCTG
CCCTTTTATTACATCGGGGTTCTTTTTTTTCCCTCCTCCTTACCCGTGAT
CTTATACCCCTCTCCTTCCTTTTCCCCTTTGCCTCTATTTTCGGCGCCCC
CAAATTGCTTCTTTTTATTCCCGCTTTTCTTTTCCCCCTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_a20.b1 MSMg01no469_a20.b1 CHROMAT_FILE:
MSMg01no469_a20.b1 PHD_FILE: MSMg01no469_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:29 2005
         (569 letters)



>mm_chr3_97740844_97741812
          Length = 969

 Score =  833 bits (431), Expect = 0.0
 Identities = 446/451 (98%)
 Strand = Plus / Minus

                                                                       
Query: 119 attaaggagagcacagggctggggccaggcatggggaataatgagtcaccatggcgaatg 178
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 attaaggagagcccagggctggggccaggcatggggaataatgagtcaccatggcgaatg 910

                                                                       
Query: 179 aaggtttctctttagtatgaagagaatgtctaatgttacttagagtgatggagggaatgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aaggtttctctttagtatgaagagaatgtctaatgttacttagagtgatggagggaatgt 850

                                                                       
Query: 239 tctacaacctactgaaaacggaactgtagacttcaaacttgtcgctttgtagtccataaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tctacaacctactgaaaacggaactgtagacttcaaacttgtcgctttgtagtccataaa 790

                                                                       
Query: 299 tcacctctcaataaagatgtgtttagagagcagcttcgttttcactgttgaaaagagaca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tcacctctcaataaagatgtgtttagagagcagcttcgttttcactgttgaaaagagaca 730

                                                                       
Query: 359 ttggattgtgtggttcactgccctcaagaaattcgttcatgtaatgcatgaaggagcaga 418
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcggattgtgtggttcactgccctcaagaaattcgttcatgtaatgcatgaaggagcaga 670

                                                                       
Query: 419 ctatggaattggcctaaggggttgctggtgataaaagctgagggggagaagggccagaga 478
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctatgggattggcctaaggggttgctggtgataaaagctgagggggagaagggccagaga 610

                                                                       
Query: 479 gaggagggcaacatggcacaggaaggacactggaaataagggctggtcagagagatgctc 538
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaggagggcaacatggtacaggaaggacactggaaataagggctggtcagagagatgctc 550

                                          
Query: 539 ccagaaatgaagtagcaaattatctcagggc 569
           |||||||||||||| ||||||||||||||||
Sbjct: 549 ccagaaatgaagtaacaaattatctcagggc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no469_a20.g1 MSMg01no469_a20.g1 CHROMAT_FILE:
MSMg01no469_a20.g1 PHD_FILE: MSMg01no469_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:29 2005
         (452 letters)



>mm_chr3_97605249_97606100
          Length = 852

 Score =  812 bits (420), Expect = 0.0
 Identities = 444/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgactcctgacctcatgctccaaagagacaccactaacccacagacaacgtattacac 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgactcctgacttcatgctccaaagagacaccactaacccacagacaacgtattacac 260

                                                                       
Query: 61  tcggctgctctccctcccagctctagtttgggatataaatatgaactgcagcaccatcaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcggctgctttccctcccagctctagtttgggatataaatatgaactgcagcaccatcaa 320

                                                                       
Query: 121 aggaaggtaagactccagtgctgaggcaggggcatggaaaagatggctatcagctggggt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaaggtaagactccagtgctgaggcaggggcatggaaaagatggctatcagctggggt 380

                                                                       
Query: 181 gtaaattccgactcttacaccgtctactatactgaaagacagaaaaatgcagattcagcc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaattccgactctcacaccgtctactatactgaaagacagaaaaatgcagattcagcc 440

                                                                       
Query: 241 atttttcagagctagctcatcttctgtcttctagagatcatcacttcagggactttagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttcagagctagctcatcttctgtcttctagagatcatcacttcagggactttagta 500

                                                                       
Query: 301 cagttcctttaggttttaatttcaggtatgcccaactaaataagatgaaatgagaatatt 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttccttcaggttttaatttcaggtatgcccaactaaataagatgaaatgagaatatt 560

                                                                       
Query: 361 ggcatattgaaagtattcaataatgtaatttcacacagtaatcagaggcatgaaccacag 420
           | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 561 gacatattgaaagtattcaataatgtagttttacacagtaatcagaggcatgaaccacag 620

                                           
Query: 421 ggaaatagccgattctgaccaacacccagttt 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaatagccgattctgaccaacacccagttt 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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