Query= MSMg01no469_b04.b1 MSMg01no469_b04.b1 CHROMAT_FILE:
MSMg01no469_b04.b1 PHD_FILE: MSMg01no469_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:31 2005
(569 letters)
>mm_chr3_41521389_41522358
Length = 970
Score = 810 bits (419), Expect = 0.0
Identities = 445/455 (97%), Gaps = 4/455 (0%)
Strand = Plus / Minus
Query: 5 gaattctccaaatttcacttattaaaatgagtataacgataactgtttactgcaaaggtt 64
|||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 455 gaattctccaaaaatgacttattaaaatgagtataacgataactgtttattgcaaaggtt 396
Query: 65 gcacagtaaattaaaagatgctgttgaaaagcaattggaagcccttccctttggcacagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gcacagtaaattaaaagatgctgttgaaaagcaattggaagcccttccctttggcacagg 336
Query: 125 gataggaaatgacatctgtgcagatgatgagaccgtgaggatccttcaagaacaattgca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gataggaaatgacatctgtgcagatgatgagaccgtgaggatccttcaagaacaattgca 276
Query: 185 actagccaatcaagtaagtagcata-tttttttacttactaaatttaaagtcttcagaaa 243
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 275 actagccaatcaagtaagtagcatattttttttacttactaaatttaaagtcttcagaaa 216
Query: 244 tgttttaatctttttaaatttttaatatttgatattata---atatcatttctcccttct 300
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 215 tattttaatctttttaaatttttaatatttgatattataatcatatcatttctcccttct 156
Query: 301 cccctctcccactcaaatccctccaataccctttcttgctctttcaaattcatgaccttt 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cccctctcccactcgaatccctccaataccctttcttgctctttcaaattcatgaccttt 96
Query: 361 gttttcttcaatgggtgttatatgtatgtacatacataatcctaaacataactattcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gttttcttcaatgggtgttatatgtatgtacatacataatcctaaacataactattcagt 36
Query: 421 ccatataatgtcacttgaatgaatttcaggactga 455
|||||||||||||||||||||||||||||||||||
Sbjct: 35 ccatataatgtcacttgaatgaatttcaggactga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_b04.g1 MSMg01no469_b04.g1 CHROMAT_FILE:
MSMg01no469_b04.g1 PHD_FILE: MSMg01no469_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:31 2005
(371 letters)
>mm_chr3_41382333_41383104
Length = 772
Score = 696 bits (360), Expect = 0.0
Identities = 369/372 (99%), Gaps = 1/372 (0%)
Strand = Plus / Plus
Query: 1 caccttcaggtggcgattttcgaattttaaaaccctccaactcaggctccagagagctga 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 caccttcaggtggcgattttcgaattttaaaaccctctaactcaggctccagagagctga 260
Query: 61 agctgctgtgaggagaggtgtgtcctctctctgtgcccctggggagcagggatggccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgctgtgaggagaggtgtgtcctctctctgtgcccctggggagcagggatggccctc 320
Query: 121 aaaggctggcagagagtaaagctgtcagcagttggtgcttcaagcacagggatggcaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggctggcagagagtaaagctgtcagcagttggtgcttcaagcacagggatggcaggg 380
Query: 181 aagagagccattacaagcggaagagggtcacaggtgtgtgtcagtcgtggacgttatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagagccattacaagcggaagagggtcacaggtgtgtgtcagtcgtggacgttatgga 440
Query: 241 cgtaagtggtcagagtgtagactgcttgt-agatggaccagagttacaggtgagagtcct 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cgtaagtggtcagagtgtagactgcttgttagatggaccagagttacaggtgagagtcct 500
Query: 300 ttctgggaagaatgaatgggtggatcttaggactgtggctgcccattctgtgaatgaagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgggaagaatgaatgggtggatcttaggactgtggctgcccattctgtgaatgaagc 560
Query: 360 tgtagcccacag 371
|||||| |||||
Sbjct: 561 tgtagctcacag 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space: 276206
Effective search space used: 276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
