BAC Information

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BAC

Clone NameMSMg01-469G24
Chromosome3 (Build37)
Map Location 141,312,724 - 141,313,131
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469G24.T7 (MSMg01no469_g24.b1)MSMg01-469G24.TJ (MSMg01no469_g24.g1)
ACCAG552674AG552675
length865812
length of high quality
(start - end)		---408 (76 - 483)
definitionCHROMAT_FILE: MSMg01no469_g24.b1 PHD_FILE: MSMg01no469_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:01 2005CHROMAT_FILE: MSMg01no469_g24.g1 PHD_FILE: MSMg01no469_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAAACCGCGGA
AATCTCAGGGCNTCCGAACAACAAGAATGAAAGATTTTTACTAGGAAACG
CAACGTCTCTCTCTCTATATATCTCAATAACATATATATATACCCACACC
CAACAACAACAAAAAACCCTACCAACAAAAAACAACCCCCCTTACTTCCC
CCACACAAAACAAAACCAAACATACCATAACACACACCCCCCCCACACCC
CCCCTCCAAAAAACCCCCCAACCCCCCACCAACACCCACCCCACCCCCCC
CACAAAAAACACACACACACATATTTCCAACCAAAACACCACCCACAAAA
ACCCCCCCCCCCCCCCCACAACACCCACCACCAACCCCCACCCACACACC
CAAAAACAACAACAAAAAACCCCCCCAAAACCCCCAACCCACCACAAACA
AAACAACCCACACCCACAAAAACCCAACCCAAACCAACCAAACCCAACAA
CAAAACACACCCCAAACACAAACCCAACCAAAAAACCCACCCAAAAACCA
AAACAAAATAACCACCACCAACAACCCCCCCCCCACCAAAAAAAACACAC
CCCACTCCCCACCAAAAACCAAATACAAAAACACACAAAAAACCCAATCC
CAAAAAAAACAACCAATAAATAACCCCAACACNACCACACAACTAACAAA
ACACCCCCCCCCCTCAAAAACCATACCACACCACCCCCCACACACCCCAA
TAAACCTCCCACCACCCCACCCCCACACCCCTACCAATAACCAAACAATA
ACAACACCCAAACAAACACAACACACCCCAAAATCACAAACCACCAACCA
CCCCCCCAAACCAAC

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAAGGCTGTGCCATTTCAATAAGG
TCTTTGGGTTCTCTGCATAAATTAATCAGCCATGAGTCACGTTTTGGTCT
CAGTCCTCTCTATTTGGTGCTCTTAATAATTCCTCAAAGGAGAGTGGTGT
GAGGACACTTGTTCATTTTCCCAAGATGCCTACCAGATGGCACGTCCATG
GTCCTCATGTCATGGCATCTACCGAGCACACTGGAAGTTTGTTTCAAAAC
CACCAACGCTGTCTGTCCTTAGGCTCCTGACATAATCCTGTCTGTGGTTC
TGGGACTCTGATATACCACATTATTGCTTGGCTCCAGTGACAAGGAGCTG
ATTTCTCTGGTACATTGAAACCCTAAGGTTTATTCATATCTACAGATCTA
TGAAAGCCGTGCTTTACNATATGAGTCAAGTCTCATTCAAAATACACTAT
TCAATGACCACATTTAACAACACCCGACTTTCCTTAGGAAAACTTTTAGG
AACATGGTTCACACAAACAATTTTGTATCCAAAGGCCCTCCCCCTTCCTC
CTCCCTGAAAGGGCTAATAATGTTTCCTCGAATGGACGAATCGTAAAAAC
CCTGCCTTAAACCCTCTCTTTCTTTTTAAAACCCTGTTACATATTATAAC
ACTCGTCCCTCCCCTTTCCCTTTTCCCTTCCTCCCCCTTTTTGGCTTTAT
TATTTTTATTACCTCCCTCCTTTTTTCATAATTTTTTCCCCCTTCTTTGT
TCGCCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_g24.g1 MSMg01no469_g24.g1 CHROMAT_FILE:
MSMg01no469_g24.g1 PHD_FILE: MSMg01no469_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:01 2005
         (408 letters)



>mm_chr3_141312524_141313331
          Length = 808

 Score =  721 bits (373), Expect = 0.0
 Identities = 399/408 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaggctgtgccatttcaataaggtctttgggttctctgcataaattaatcagccatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccaaggctgtgccatttcaataaggtctttgggttctctgcataaattaatcagccatga 549

                                                                       
Query: 61  gtcacgttttggtctcagtcctctctatttggtgctcttaataattcctcaaaggagagt 120
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtcatgttttgttctcagtcctctctatttggtgctcttaataattcctcaaaggagagt 489

                                                                       
Query: 121 ggtgtgaggacacttgttcattttcccaagatgcctaccagatggcacgtccatggtcct 180
           | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 488 gatgtgaggacacttgttcattttcccaaggtgcctaccagatggcacgcccatggtcct 429

                                                                       
Query: 181 catgtcatggcatctaccgagcacactggaagtttgtttcaaaaccaccaacgctgtctg 240
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 catgtcgtggcatctactgagcacactggaagtttgtttcaaaaccaccaacgctgtctg 369

                                                                       
Query: 241 tccttaggctcctgacataatcctgtctgtggttctgggactctgatataccacattatt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tccttaggctcccgacataatcctgtctgtggttctgggactctgatataccacattatt 309

                                                                       
Query: 301 gcttggctccagtgacaaggagctgatttctctggtacattgaaaccctaaggtttattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcttggctccagtgacaaggagctgatttctctggtacattgaaaccctaaggtttattc 249

                                                           
Query: 361 atatctacagatctatgaaagccgtgctttacnatatgagtcaagtct 408
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 248 atatctacagatctatgaaagccgtgctttacaatatgagtcaagtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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