Query= MSMg01no469_i07.b1 MSMg01no469_i07.b1 CHROMAT_FILE:
MSMg01no469_i07.b1 PHD_FILE: MSMg01no469_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:08 2005
(246 letters)
>mm_chr3_51780429_51781074
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Plus
Query: 1 gcttgtttatagctcaacctcctaaccaacttgggtccatgttgctttctgttgagtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttgtttatagctcaacctcctaaccaacttgggtccatgttgctttctgttgagtgac 260
Query: 61 ctgatttcacccttagacctcctgcactgacctcagcttccctcaccagccagtatcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgatttcacccttagacctcctgcactgacctcagcttccctcaccagccagtatcttt 320
Query: 121 ctcagggactgggtattttgtcttggtcttgaaaattcctctcaattaatactttgatca 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagggactgggtattttgccttggtcttgaaaattcctctcaattaatactttgatca 380
Query: 181 gctacatgctaaaagatcttgaagcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacatgctaaaagatcttgaagcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 440
Query: 241 gtgtgt 246
||||||
Sbjct: 441 gtgtgt 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no469_i07.g1 MSMg01no469_i07.g1 CHROMAT_FILE:
MSMg01no469_i07.g1 PHD_FILE: MSMg01no469_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:08 2005
(275 letters)
>mm_chr3_51955667_51956344
Length = 678
Score = 462 bits (239), Expect = e-135
Identities = 268/279 (96%), Gaps = 5/279 (1%)
Strand = Plus / Minus
Query: 1 gttttggtgtgtgggtgatggttctatcagccctctttctctgggctgactttgacattt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 478 gttttggtgtgtgggtgatggttctatcagccctccttctctgggctgactttgacattt 419
Query: 61 ctggagttttgctcatgttagatcattatttcctcgtctt--tgtgtctgccaagttttg 118
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 ctggagttttgctcatgttagatcattatttcctcgtctttgtgtgtctgccaagttttg 359
Query: 119 attgggtggtagatactgtgattattcttaagttttattctaggaaatagttaaattatg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attgggtggtagatactgtgattattcttaagttttattctaggaaatagttaaattatg 299
Query: 179 tgaaaataatttggctcttttccttgttacctctggttttctttggttttttttttctgc 238
|||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct: 298 tgaaaatagtttggctcttttccttgtttcctctgtttttctttg-ttttttttttctgt 240
Query: 239 ttatttagtatatatacata--catatacatactcacat 275
|||||||||||||||| ||| |||||||||||||||||
Sbjct: 239 ttatttagtatatatatatatacatatacatactcacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 678
Length adjustment: 9
Effective length of query: 266
Effective length of database: 669
Effective search space: 177954
Effective search space used: 177954
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
