BAC Information

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BAC

Clone NameMSMg01-469K07
Chromosome3 (Build37)
Map Location 19,613,414 - 19,613,655
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
Downstream geneLOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469K07.T7 (MSMg01no469_k07.b1)MSMg01-469K07.TJ (MSMg01no469_k07.g1)
ACCAG552831AG552832
length771745
length of high quality
(start - end)
---242 (327 - 568)
definitionCHROMAT_FILE: MSMg01no469_k07.b1 PHD_FILE: MSMg01no469_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:17 2005CHROMAT_FILE: MSMg01no469_k07.g1 PHD_FILE: MSMg01no469_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCTCAAAACTTGTGGCGGAAAGGAACATTTTTCAAAAGGAGGGNGGAA
ANCGCTGTTTCCACAGACCTGAGTGTTTAATGGTGCTATTTGATTTTCTG
GAGTCACCTTCTTGCACTCTTTAATATATTGGATATCAGCCCCCTATCTG
ATTTGTGATAGGTAATGATTTTTTCCCAATCTGTTGGCGGCCTTTTTGTC
TTATTGACGGTGACTTTTGTTTTGTAGAACCTTTGCAACCTTATGAGGTC
CCATTTATCGAATCTTGATCTTACAGCACAAGTCATTGTCTGCCCTATTC
AGGAATTTTTTTTTTTGTTTCCATATCTTTAAGGCTTATCCCCACTCTCT
CCTCTACAAGTTTCACTGTCTCTGGTTTTATGCGTACGTCCTTGACCCAC
TTATATTTTACCCCAATACCCGGAGCAAGTAATGTATTAATTCGCATTCT
TCTTATATGATACCTCCCAGTTGCGCCCTTACCATTTGTTTGATAAACGC
CGTCTTTTCCATTGGATGTTTTCCCCCCCTTTGTCATTAATCTCGTGACC
CATTGCCAGCGTATTCCTTTTCTGGTAACTTTCTATCTAATACCCTCTGT
TCTTACTCTGTACTTGTGCTTTAACCTCTTCACCATGTCCCCTTTTTACC
CACTATTCGCGGCCCTTTCCTTTTATTCCCCACATGATTTACGTTCTCTG
CTCTTTTATTTCTCCCTACATTCTTCATTCCTCTTTTTTTCTCGTAACTC
ATTTTATTTCGCGCTTTTCCC
NTGCGATGATAGTGGGTAGCCTGGNGGNCGCCTGGTCGTCCAATTTAGGT
GAACTATAGAAGTACTGCAGAAATCACTGTAGTTAGCCTGTGTGGGCCAG
CACTCCTTGGAAAGACAGATGTCTTTTTCTCAGGCAGGCCTAAGTGGCAT
CCCATCGAGAACACTACTTGAGTTTTCCACACCCTAAAGCCATTTTACTG
GAAGTGTTCCCCTCCCTATAGTAAGAATGAGAAATACAAGAGTAACTCAC
CATGGTGTGGAACTTGCAAAAGATGTCCAGAAAGAAGACAAACACTTCTG
TAGGGCTGCAAATAAAATTTTTCTTTCCTTCCAGTTGTTGTATATAAAGT
CAGTACTAATTGGCTGAGTAAGTCTTTTGGGTCTTTTAATGAAAGCCTTG
CTAAGTTTTCTCAGACTACTGGTATTCATGAGCTCAAGTGAAGAAGGCAG
CTACCAGTTCCCAACCTCCATCAGATTCCCCATAGTGCTAGCCTGTAACA
GAGGGCAGTGAATTTCCAGACATCTCAGCTCTTCAGAAGAATATCTTTCT
CACTTTTGTCTAGGTGTCCCCGCACCTTATCTGAAGGGGAAAGGACTGAG
TAAATCCATATGATCAAATGCCTTGTAATAATCTGAAGGCCATGTCACTC
ATCGCATGATTCTGATGGTCGACTATTTAACGTACGCGTTGATAATATCA
ACTTCCCCTCTAAAGTGATAATCTGACCATTTTTTATCCAAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_k07.g1 MSMg01no469_k07.g1 CHROMAT_FILE:
MSMg01no469_k07.g1 PHD_FILE: MSMg01no469_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:17 2005
         (242 letters)



>mm_chr3_19613214_19613855
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttccagttgttgtatataaagtcagtactaattggctgagtaagtcttttgggtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccttccagttgttgtatataaagtcagtactaattggctgagtaagtcttttgggtcttt 383

                                                                       
Query: 61  taatgaaagccttgctaagttttctcagactactggtattcatgagctcaagtgaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taatgaaagccttgctaagttttctcagactactggtattcatgagctcaagtgaagaag 323

                                                                       
Query: 121 gcagctaccagttcccaacctccatcagattccccatagtgctagcctgtaacagagggc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 322 gcagctaccagttcccaacctccatcagattccccaaagtgctagcctgtaacagagggc 263

                                                                       
Query: 181 agtgaatttccagacatctcagctcttcagaagaatatctttctcacttttgtctaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtgaatttccagacatctcagctcttcagaagaatatctttctcacttttgtctaggtg 203

             
Query: 241 tc 242
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)