Query= MSMg01no469_k14.b1 MSMg01no469_k14.b1 CHROMAT_FILE:
MSMg01no469_k14.b1 PHD_FILE: MSMg01no469_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:19 2005
(549 letters)
>mm_chr3_139503925_139504871
Length = 947
Score = 864 bits (447), Expect = 0.0
Identities = 473/483 (97%), Gaps = 4/483 (0%)
Strand = Plus / Minus
Query: 66 cctctcttcattcattcacctgcttgtgattttattctgctaaagaatgactctgctggg 125
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 cctctgttcattcattcacctgcttgtgattttattctgctaaagaatgactctgctggg 888
Query: 126 gtctggcagggtaatttattggtaaagagacctcagtgctcttgcagagttcaatttcca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gtctggcagggtaatttattggtaaagagacctcagtgctcttgcagagttcaatttcca 828
Query: 186 gtacccacatcaggtggttcacacccacctataaatccagggcttgtggtttatatatta 245
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct: 827 gtacccacatcaggtggttcacacccacctataaatccagggcttgaggattggatatta 768
Query: 246 tgttctgatttccataggcaccaccaaacatgctatgcatatgtactcatgtgttaacac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgttctgatttccataggcaccaccaaacatgctatgcatatgtactcatgtgttaacac 708
Query: 306 atacgaactaaaaccaatacatattttcataaaaaagaatcaatgcatccaccacatcag 365
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 707 atacgaactaaaaccaatacatattttcaaaaaaaagaatcaatgcatccac---atcag 651
Query: 366 caagatgcaattttaccaagttccattacattgtagaagtgagaatcatattccgtcgct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 caagatgcaattttaccaagttccattacattgtagaagtgagaatcatattccgtcgct 591
Query: 426 tcctatttagcaggaaaagtgaataatactaattaaaacataatctgttttaaaatgtct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcctatttagcaggaaaagtgaataatactaattaaaacataatctgttttaaaatgtct 531
Query: 486 -gataatccaaatgtaggtttacatacaaaactttattcccactactttcgtgcaaaatt 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgataatccaaatgtaggtttacatacaaaactttattcccactactttcgtgcaaaatt 471
Query: 545 tca 547
|||
Sbjct: 470 tca 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 947
Length adjustment: 10
Effective length of query: 539
Effective length of database: 937
Effective search space: 505043
Effective search space used: 505043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_k14.g1 MSMg01no469_k14.g1 CHROMAT_FILE:
MSMg01no469_k14.g1 PHD_FILE: MSMg01no469_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:19 2005
(457 letters)
>mm_chr3_139335210_139336065
Length = 856
Score = 814 bits (421), Expect = 0.0
Identities = 448/457 (98%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 1 tttttaatttatcctttggccagcaccaatttttgtcagtttttatttattttgaattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttaatttatcctttggccagcaccaatttttgtcagtttttatttattttgaattac 260
Query: 61 ttttgctcctccttcctatagaaaagttctaaatcctgtgtgcagagttcagcttggaag 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgctcctccttcctatacaaaagttctaaatcctgtgtgcagagttcagcttggaag 320
Query: 121 tgttgcttatgtttcctttcttctttgcagattatctttcctcccagtgatcacatcagg 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tgttgcttatgtttcctttcttctttgcagattatctttcctcccagagatcacatcagg 380
Query: 181 atgttaaccactactgtgtcactcgctcaaacacagaagagcagttgcttttcctgtttt 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 atgttaaccactactgtgtcactcgctcaaacacagaagagcggttgcttttcctgtttt 440
Query: 241 cattttctctacatctggtttcaaccagtcatgatggagctagagccccagagctagaat 300
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattcac-ctacatctggtttcaaccagtcatgatggagctagagccccagagctagaat 499
Query: 301 cataggtagttgcaagtcacctgatgtgggtgctgggaaccaagcttgggtcatttggaa 360
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cataggtatttgcaggtcacctgatgtgggtgctgggaaccaagcttgggtcatttggaa 559
Query: 361 gaggatcatgggatgttagccactgagccatctctagctgctatgatggcttttcattgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaggatcatgggatgttagccactgagccatctctagctgctatgatggcttttcattgt 619
Query: 421 tttcttagttttgtggtggcacagaaagtgatgtggc 457
|||||||||||||||| ||||||||||||||||||||
Sbjct: 620 tttcttagttttgtgggggcacagaaagtgatgtggc 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space: 378162
Effective search space used: 378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
