Query= MSMg01no469_k20.b1 MSMg01no469_k20.b1 CHROMAT_FILE:
MSMg01no469_k20.b1 PHD_FILE: MSMg01no469_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:20 2005
(521 letters)
>mm_chr3_57605687_57606609
Length = 923
Score = 957 bits (495), Expect = 0.0
Identities = 516/525 (98%), Gaps = 6/525 (1%)
Strand = Plus / Minus
Query: 1 aataaagacagacggaatgtcaattttctttagtgtatcaactgcgtaaaagaacagcac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aataaagacagacggaatgtcaattttctttagtgtatcaactgcgtaaaagaacagcaa 664
Query: 61 acttatttgtaacaaggcaatacttaagggtctctctaagagcagcaaatgcaactagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acttatttgtaacaaggcaatacttaagggtctctctaagagcagcaaatgcaactagac 604
Query: 121 acaattacactcaaatttccatgcacatgttcatttagttctctcaacagtcttacaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acaattacactcaaatttccatgcacatgttcatttagttctctcaacagtcttacaagg 544
Query: 181 tagagacagtttttaatctctaatattttcctttgacttactcttctacag---aaaaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 543 tagagacagtttttaatctctaatattttcctttgacttactcttctacagaaaaaaaaa 484
Query: 238 ttctatttaactattaaagaacaaagaaaagggcaaaattttagccttccttcccacaca 297
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 --caatttaactattcaagaacaaagaaaagggcaaaattttagccttccttcccacaca 426
Query: 298 taacttgattcctaagtacagaggaaaatgtattttatatacacatttcaaggacagaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taacttgattcctaagtacagaggaaaatgtattttatatacacatttcaaggacagaaa 366
Query: 358 caagccaccagagtaagatgtctccactcagggaagtttaacgggcaacaccatacttct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caagccaccagagtaagatgtctccactcagggaagtttaacgggcaacaccatacttct 306
Query: 418 gcctctcaa-ggaaatggtggcagattgcccggcataagacaaggagctagggagttcat 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcctctcaagggaaatggtggcagattgcccggcataagacaaggagctagggagttcat 246
Query: 477 gttcctcctagaggtcccaagaaacctgaccctgacatacgtatt 521
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gttcctcctagaggtcccaagaaacctgaccctgacatacgtatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 923
Length adjustment: 10
Effective length of query: 511
Effective length of database: 913
Effective search space: 466543
Effective search space used: 466543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_k20.g1 MSMg01no469_k20.g1 CHROMAT_FILE:
MSMg01no469_k20.g1 PHD_FILE: MSMg01no469_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:20 2005
(485 letters)
>mm_chr3_57432506_57433390
Length = 885
Score = 891 bits (461), Expect = 0.0
Identities = 479/485 (98%)
Strand = Plus / Plus
Query: 1 tttgtatgttctgtttatttttttatttttttgtcaaacatgtgactcacaaatgtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtatgttctgtttatttttttatttttttgtcaaacatgtgactcacaaatgtgtga 260
Query: 61 tgactaaagaaactttttattctaggcatctatgttggagtcagagacaaacacctacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactaaagaaactttttattctaggcatctatgttggagtcagagacaaacacctacta 320
Query: 121 gctgtgcctggaagataagttaacctttactcagtgaccttcatccagacatgtacacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgcctggaagataagttaacctttactcagtgaccttcatccagacatgtacacct 380
Query: 181 gggaccatctacttcttatgatatgactaactgcatttttggcttctgtaacctgcttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaccatctacttcttatgatatgactaactgcatttttggcttctgtaacctgcttat 440
Query: 241 gcagactttcttggactattgtgaggtagcctgactatctaatcttggcagagcagaata 300
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagacattcaaggactattgtgaggtagcctgactatctaatcttggcagagcagaata 500
Query: 301 gctcctggattgcttgtgtagatactcaaggtattcttgtgagtttccccttaaaaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcctggattgcttgtgtagatactcaaggtattcttgtgagtttccccttaaaaatcc 560
Query: 361 tcccctcaccccttttggcatggcaatttcaagtttgtctcagagattgttgtcctgcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccctcaccccttttggcatggcaatttcaagtttgtctcagagattgttgtcctgcta 620
Query: 421 gcagtaatgaataaatctctaaattattattagttctgagagagggtctaacagccctgt 480
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 621 gcagtaatgaataaatctctaaattattattatttttgagacagggtctaacagccctgt 680
Query: 481 ctaac 485
|||||
Sbjct: 681 ctaac 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
