NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGATTTCCCCAATGAGCTGAAATGTATCATTTATCCCACTTCC
TGTGAATAATTCCCAACCCTAACTTAGATCCTTGAAAATCATATCCTTTC
TATAATAAAATGGAAAGCAGAGGGTAAAATTATAAAATAAAACTCGATGT
TTACATTTTGAGATCACCTAACAGTGAAGGGAACTACTGACTTACATAAC
TGACCTGTGTAGATAATCTGGAGGATAAAATGAACTTAACATGGTTACTC
CAGTAACATCACCAAGACTCTGTGCGTTCTATCTAAGTATCACAGTGCTT
TGCTAAACAATTTCTCATGTTCAACTTCCCGCCGTGACTACCATGGTTTC
CTATATCTTAACAGTAAAAAAAACAAAACAAAACAAACAAAAAAAAACAA
AACAAACAAACAAAAAAACCTGTGTGGTTTATAAAACTCATATCCTCATG
CCATACCACAGGTTTTGTTCATCTCTCTGGCTTTGACTGGGTCGCTTCCA
CCTCCTGGTAGCTCTCTATGGAGAATAATTTCCAAGTTCAATTCAACTAC
GTTCAAAACATATTAAAGGAGATGAATAAATGAAACGAGGATCTAATCAC
TCCTAGGAATCATTGCGGAGCAAGTGTTTCTTGTATATAGGAGGGAGGAA
ACAGCCAGGGCTTCCTAGAAAAATCCCGAAGGGATTTTGTCCCCAATATA
ATCTCTTAACCTN

GAGTACGCTGCTTTGCGCGTGTCAACAATTCTCAAAATGAAGACGCTTCG
TCGCGATCCTACGAAGCGGGGACGTGGATACGCGAGATACGCTCCCGAAT
TCCGTCACCCCCGGCTCGTTATGGTTGGCAGTAGGTTGACGACAACAAAC
GTATAAGGCTAAACAACACTAATTTCTGAATATGGCCCCAGTTACGATTC
CGCCATTGTATCTTCGCTCGCCATCTCACACCCGACAAACGAGTGTATAC
AATATCGATGAGACGCGAGAGACATTAGGCCCATACACATTACCATGCTA
AATACACTCAGAATAACAACATTTACAATGTATAACAGCAGGCCAACTGA
TTACAGACTCGACCCTGCCCTGACGGCACCCGCAATAACAATAGAGACGC
ATAATGCGAGAATACGGGGAATCATACATATCCAAGAACGAGCCATAATT
GGGCTTGATGCAAAATGGTTACGTAACATTACCGAAAGAATAATAGCTAA
TACGGCCTAATGAATTTTATACAACACACGTAGCATTTACACAACAGTCA
AATCGCGCATAAATAATGACATGTAGAACGTGAGATCGTGCACTATGAAG
TCGCCGCATTTTTATATGTATCCCTACGCCACGCCATTATTCACTTTTAT
ACTCCAGACTTCGAGTGGACTGCCATAAATCAGACGCAGTGTTTATTATA
GGAAGCCCCATCATTGCGCACGTGATTATTCCGCCCACATGCTACTTTCC
TTCTCGGAATCCTGCAAACGCATATATTAAACCGCGACCGACGCAGTACG
TTAATCAGGTACATGGAGTNTAAGAGCGAGACGAGATATAATGACGAACG
AATTGGTCAGCCACACAAAATN

Query= MSMg01no469_l16.b1 MSMg01no469_l16.b1 CHROMAT_FILE:
MSMg01no469_l16.b1 PHD_FILE: MSMg01no469_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:24 2005
         (514 letters)



>mm_chr3_123425096_123426009
          Length = 914

 Score =  917 bits (474), Expect = 0.0
 Identities = 501/514 (97%), Gaps = 8/514 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctgaaatgtatcatttatcccacttcctgtgaataattcccaaccctaacttagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gagctgaaatgtatcatttatcccacttcctgtgaataattcccaaccctaacttagatc 486

                                                                       
Query: 61  cttgaaaatcatatcctttctataataaaatggaaagcagagggtaaaattataaaataa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cttgaaaattatatcctttctataataaaatggaaagcagagggtaaaattataaaataa 426

                                                                       
Query: 121 aactcgatgtttacattttgagatcacctaacagtgaagggaactactgacttacataac 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aactcaatgtttacattttgagatcacctaacagtgaagggaactactgacttacataac 366

                                                                       
Query: 181 tgacctgtgtagataatctggaggataaaatgaacttaacatggttactccagtaacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgacctgtgtagataatctggaggataaaatgaacttaacatggttactccagtaacatc 306

                                                                       
Query: 241 accaagactctgtgcgttctatctaagtatcacagtgctttgctaaacaatttctcatgt 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atcaagactctgtgcgttctatctaagtatcacagtgctttgctaaacaatttctcatgt 246

                                                                       
Query: 301 tcaacttcccgccgtgactaccatggtttcctatatcttaacagtaaaaaaaacaaaaca 360
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 245 tcaacttcccaccgtgactaccatggtttcctatatcttaacagtaaaaaaaa----aca 190

                                                                       
Query: 361 aaacaaacaaaaaaaaacaaaacaaacaaacaaaaaaacctgtgtggtttataaaactca 420
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaacaaa----aaaaaacaaaacaaacaaacaaaaaaacctgtgtggtttataaaactca 134

                                                                       
Query: 421 tatcctcatgccataccacaggttttgttcatctctctggctttgactgggtcgcttcca 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tatcctcatgccataccacaagttttgttcatctctctggctttgactgggtcgcttcca 74

                                             
Query: 481 cctcctggtagctctctatggagaataatttcca 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 73  cctcctggtagctctctatggagaataatttcca 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)