BAC Information

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BAC

Clone NameMSMg01-469P05
Chromosome3 (Build37)
Map Location 81,878,142 - 81,878,544
singlet/doubletsinglet
Overlap geneGucy1b3
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5
Downstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469P05.T7 (MSMg01no469_p05.b1)MSMg01-469P05.TJ (MSMg01no469_p05.g1)
ACCAG553066AG553067
length919760
length of high quality
(start - end)
---403 (76 - 478)
definitionCHROMAT_FILE: MSMg01no469_p05.b1 PHD_FILE: MSMg01no469_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:42 2005CHROMAT_FILE: MSMg01no469_p05.g1 PHD_FILE: MSMg01no469_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCTCTATCCTTTCGCCCTGTTAAACGACCTAATTCTTCCTAACACGCA
CCCGCGGAACCCNCCAATTTTTCTAAAAAACGCCTTTGAAAGATATGCAG
TTCTCTAATTATACGCTGGCATTCACTCTTTGCCCTCTTCGGATGCCAAG
TAGCAATTCGACTGTGTGTACAGCTATCTATCTTCTGAGTCTTCTTCTAG
TCGAATGGCTTTAGAGTACTTTGTTATGCCCATAGATGTGCTTCGCCTTA
TGTTATACATCCTCGTATCGTTTGCTTATATTAGCCCTGTTACTTTTCTT
GATCTTACTTCCCATCCTTTTTCCTTTCTCCCCTTCTTCCCACCCATTTT
TTTTTTTTTTTTAAGCCTCCCACCCTACACACCCCTGCTCTCAATCCTGA
CTTTATCTATTTCTTTCCTCCTTTTCTGTTCTCTCCGATCCCTTTCGGTT
CAATTACCTATCCCTCCCACCACGTTCTTCCTTCATTTCTTCACCCTTCT
CCCTTCTCTCCTCCTCTCTTCCCTCGTTTCCCTACTACTCTCTCTTTTTT
CTTTTCTACCTAGTCCCCATTTTTCCCTTCCCCACTTCTCCCTCTATATT
TTTTCTCCCCCCCCCTTACTCTTCTTCCTTCTCTCCACTCCTTGTTTCTT
CCCTCTCCCTTTGTTCCTAATTTCCCCCCTTTCCTCTTTTCTTCCTTCCC
TTTTTCCTATCATTTCTCTCCTCCTCATCCTACCGTCTTTTTTTCCTCAT
CCTCTCTTTTTTCCCCTTTTTTTTTACCCATACTTTACCTTTTATTATTC
CTCTCTTCCATTTCTATTTCCCTTTTCTCTCGCTTCTTTCCCCTTCTCCC
TCCTCTTTTTTTCTTCTCCCCTCTTTTTCCTTTTACCTTTCTTGCACCTC
TCTCCCCCTCTTTTCTTTT
CTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCGTCGTCCCTTTCCCCTCCCCCAT
CTTCTTACCCCTGCTCACCTGTCACCGTGGTGCAACAGGGGTAGCTCAGG
AACCTGAGCCCTGAGCTTCCCACACCACCCTGCCCGTGGAACCCAGAATC
CCCAGAAGTTGGAGGCTGGGGTTGAGTGGTGGGGACCCAACCAGACCCAG
AGACTCGGAGCACTCCAGCAGATCATCTGTCCCCACCTCCCACCAAAAGC
GCTGTTCCTCGCGGCCCTCCGCTCTGTGTGCCCTGGGGCTTGTTTCTGCA
TCTCAGCCAGCTCTCTAGCCAGTCAAGGTCCACCCGCTCAGGTGTGATGT
TCCGCTGACCATCCTGACAGCACTCACCATGGTGTCCGCGCCCGGAGCCT
AGGAAGCAGCTTCCAGGCAAGAGTACCGCGGAAGGGACCCAGACAGCGAC
TACAGCGGCGACAGTGCTCCCAGACCAGCACAGAGCTGACGCTAGGGGAT
CATTCTCGGTCAACTTTGAATGCCACCTCTTCTCCCCCCCTGCCGAGTGT
ACCCGTTGGAAGTTTGTCCGCCCGTTTTTTCCCCATTTCACCCTATCCTT
GTCCCCCGTTGCTTTTCTTACCCTCTCCCCCCTTCTGTGTTTCATTCCCT
TTCCGTCCCTTTTTGTTTTTCCCCCTTTTCCCTTTCCCCCCCTTTTTTTT
CCTTTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_p05.g1 MSMg01no469_p05.g1 CHROMAT_FILE:
MSMg01no469_p05.g1 PHD_FILE: MSMg01no469_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:42 2005
         (403 letters)



>mm_chr3_81877942_81878744
          Length = 803

 Score =  772 bits (399), Expect = 0.0
 Identities = 402/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgtcgtccctttcccctcccccatcttcttacccctgctcacctgtcaccgtggtgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgtcgtccctttcccctcccccatcttcttacccctgctcacctgtcaccgtggtgcaa 260

                                                                       
Query: 61  caggggtagctcaggaacctgagccctgagcttcccacaccaccctgcccgtggaaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggggtagctcaggaacctgagccctgagcttcccacaccaccctgcccgtggaaccca 320

                                                                       
Query: 121 gaatccccagaagttggaggctggggttgagtggtggggacccaaccagacccagagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatccccagaagttggaggctggggttgagtggtggggacccaaccagacccagagact 380

                                                                       
Query: 181 cggagcactccagcagatcatctgtccccacctcccaccaaaagcgctgttcctcgcggc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggagcactccagcagatcatatgtccccacctcccaccaaaagcgctgttcctcgcggc 440

                                                                       
Query: 241 cctccgctctgtgtgccctggggcttgtttctgcatctcagccagctctctagccagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctccgctctgtgtgccctggggcttgtttctgcatctcagccagctctctagccagtca 500

                                                                       
Query: 301 aggtccacccgctcaggtgtgatgttccgctgaccatcctgacagcactcaccatggtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtccacccgctcaggtgtgatgttccgctgaccatcctgacagcactcaccatggtgt 560

                                                      
Query: 361 ccgcgcccggagcctaggaagcagcttccaggcaagagtaccg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccgcgcccggagcctaggaagcagcttccaggcaagagtaccg 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)